Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations
Site-directed mutagenesis is frequently used by scientists to investigate the functional impact
of amino acid mutations in the laboratory. Over 10 000 such laboratory-induced mutations …
of amino acid mutations in the laboratory. Over 10 000 such laboratory-induced mutations …
Mutation@ A Glance: an integrative web application for analysing mutations from human genetic diseases
Although mutation analysis serves as a key part in making a definitive diagnosis about a
genetic disease, it still remains a time-consuming step to interpret their biological …
genetic disease, it still remains a time-consuming step to interpret their biological …
mmCSM-PPI: predicting the effects of multiple point mutations on protein–protein interactions
CHM Rodrigues, DEV Pires… - Nucleic Acids Research, 2021 - academic.oup.com
Protein–protein interactions play a crucial role in all cellular functions and biological
processes and mutations leading to their disruption are enriched in many diseases. While a …
processes and mutations leading to their disruption are enriched in many diseases. While a …
Ranking insertion, deletion and nonsense mutations based on their effect on genetic information
Background Genetic variations contribute to normal phenotypic differences as well as
diseases, and new sequencing technologies are greatly increasing the capacity to identify …
diseases, and new sequencing technologies are greatly increasing the capacity to identify …
The SAAP pipeline and database: tools to analyze the impact and predict the pathogenicity of mutations
NS Al-Numair, ACR Martin - BMC genomics, 2013 - Springer
Background Understanding and predicting the effects of mutations on protein structure and
phenotype is an increasingly important area. Genes for many genetically linked diseases …
phenotype is an increasingly important area. Genes for many genetically linked diseases …
Physicochemical feature-based classification of amino acid mutations
A huge quantity of gene and protein sequences have become available during the post-
genomic era, and information about genetic variations, including amino acid substitutions …
genomic era, and information about genetic variations, including amino acid substitutions …
Identification of pathogenic missense mutations using protein stability predictors
L Gerasimavicius, X Liu, JA Marsh - Scientific Reports, 2020 - nature.com
Attempts at using protein structures to identify disease-causing mutations have been
dominated by the idea that most pathogenic mutations are disruptive at a structural level …
dominated by the idea that most pathogenic mutations are disruptive at a structural level …
Predicting the functional impact of protein mutations: application to cancer genomics
As large-scale re-sequencing of genomes reveals many protein mutations, especially in
human cancer tissues, prediction of their likely functional impact becomes important …
human cancer tissues, prediction of their likely functional impact becomes important …
Mechismo: predicting the mechanistic impact of mutations and modifications on molecular interactions
MJ Betts, Q Lu, YY Jiang, A Drusko… - Nucleic acids …, 2015 - academic.oup.com
Systematic interrogation of mutation or protein modification data is important to identify sites
with functional consequences and to deduce global consequences from large data sets …
with functional consequences and to deduce global consequences from large data sets …
[HTML][HTML] dms-view: Interactive visualization tool for deep mutational scanning data
The high-throughput technique of deep mutational scanning (DMS) has recently made it
possible to experimentally measure the effects of all amino-acid mutations to a protein …
possible to experimentally measure the effects of all amino-acid mutations to a protein …