Incorporating gene annotation into genomic prediction of complex phenotypes
N Gao, JWR Martini, Z Zhang, X Yuan, H Zhang… - Genetics, 2017 - academic.oup.com
Gao et al. propose several approaches to incorporate gene annotation into genomic
prediction and evaluate these new methods on populations..... Today, genomic prediction …
prediction and evaluate these new methods on populations..... Today, genomic prediction …
Haplotype-based genome-wide prediction models exploit local epistatic interactions among markers
Genome-wide prediction approaches represent versatile tools for the analysis and
prediction of complex traits. Mostly they rely on marker-based information, but scenarios …
prediction of complex traits. Mostly they rely on marker-based information, but scenarios …
GVCHAP: a computing pipeline for genomic prediction and variance component estimation using haplotypes and SNP markers
D Prakapenka, C Wang, Z Liang, C Bian, C Tan… - Frontiers in …, 2020 - frontiersin.org
Haplotype prediction models open many possibilities to improve the accuracy of genomic
selection but require more data processing and computing time than single-SNP prediction …
selection but require more data processing and computing time than single-SNP prediction …
[HTML][HTML] Haplotype analysis of genomic prediction using structural and functional genomic information for seven human phenotypes
Genomic prediction using multi-allelic haplotype models improved the prediction accuracy
for all seven human phenotypes, the normality transformed high density lipoproteins, low …
for all seven human phenotypes, the normality transformed high density lipoproteins, low …
LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants
MJ Machiela, SJ Chanock - Bioinformatics, 2015 - academic.oup.com
Assessing linkage disequilibrium (LD) across ancestral populations is a powerful approach
for investigating population-specific genetic structure as well as functionally mapping …
for investigating population-specific genetic structure as well as functionally mapping …
[HTML][HTML] Haplotype blocks for genomic prediction: a comparative evaluation in multiple crop datasets
SE Weber, M Frisch, RJ Snowdon… - Frontiers in Plant …, 2023 - frontiersin.org
In modern plant breeding, genomic selection is becoming the gold standard for selection of
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …
Using genetic distance to infer the accuracy of genomic prediction
The prediction of phenotypic traits using high-density genomic data has many applications
such as the selection of plants and animals of commercial interest; and it is expected to play …
such as the selection of plants and animals of commercial interest; and it is expected to play …
Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking
HD Daetwyler, MPL Calus, R Pong-Wong… - Genetics, 2013 - academic.oup.com
The genomic prediction of phenotypes and breeding values in animals and plants has
developed rapidly into its own research field. Results of genomic prediction studies are often …
developed rapidly into its own research field. Results of genomic prediction studies are often …
The effect of using genealogy-based haplotypes for genomic prediction
Background Genomic prediction uses two sources of information: linkage disequilibrium
between markers and quantitative trait loci, and additive genetic relationships between …
between markers and quantitative trait loci, and additive genetic relationships between …
Influence of genetic interactions on polygenic prediction
Prediction of phenotypes from genotypes is an important objective to fulfill the promises of
genomics, precision medicine and agriculture. Although it's now possible to account for the …
genomics, precision medicine and agriculture. Although it's now possible to account for the …