A phylogenetic analysis of indel dynamics in the cotton genus

CE Grover, Y Yu, RA Wing, AH Paterson… - … Biology and Evolution, 2008 - academic.oup.com
Genome size evolution is a dynamic process involving counterbalancing mechanisms
whose actions vary across lineages and over time. Whereas the primary mechanism of …

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium)

CE Grover, HR Kim, RA Wing, AH Paterson… - The Plant …, 2007 - Wiley Online Library
Genome sizes vary by several orders of magnitude, driven by mechanisms such as
illegitimate recombination and transposable element proliferation. Prior analysis of the CesA …

Incongruent patterns of local and global genome size evolution in cotton

CE Grover, HR Kim, RA Wing, AH Paterson… - Genome …, 2004 - genome.cshlp.org
Genome sizes in plants vary over several orders of magnitude, reflecting a combination of
differentially acting local and global forces such as biases in indel accumulation and …

Duplicated genes evolve independently after polyploid formation in cotton

RC Cronn, RL Small, JF Wendel - Proceedings of the …, 1999 - National Acad Sciences
Of the many processes that generate gene duplications, polyploidy is unique in that entire
genomes are duplicated. This process has been important in the evolution of many …

Extensive and Biased Intergenomic Nonreciprocal DNA Exchanges Shaped a Nascent Polyploid Genome, Gossypium (Cotton)

H Guo, X Wang, H Gundlach, KFX Mayer… - Genetics, 2014 - academic.oup.com
Genome duplication is thought to be central to the evolution of morphological complexity,
and some polyploids enjoy a variety of capabilities that transgress those of their diploid …

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

LE Flagel, JF Wendel, JA Udall - BMC genomics, 2012 - Springer
Background Modern allotetraploid cotton contains an “A” and “D” genome from an ancestral
polyploidy event that occurred approximately 1–2 million years ago. Diploid A-and D …

Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes

JL Conover, JF Wendel - Molecular biology and evolution, 2022 - academic.oup.com
Whole-genome duplication (polyploidization) is among the most dramatic mutational
processes in nature, so understanding how natural selection differs in polyploids relative to …

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
Polyploidy plays a major role in genome evolution, which corresponds to environmental
changes over millions of years. The mechanisms of genome evolution, particularly during …

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
Understanding the composition, evolution, and function of the Gossypium hirsutum (cotton)
genome is complicated by the joint presence of two genomes in its nucleus (AT and DT …

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

JS Hawkins, SR Proulx, RA Rapp… - Proceedings of the …, 2009 - National Acad Sciences
Transposable elements, particularly LTR-retrotransposons, comprise the primary vehicle for
genome size expansion in plants, while DNA removal through illegitimate recombination …