The microbial contribution to macroecology

A Barberán, EO Casamayor, N Fierer - Frontiers in microbiology, 2014 - frontiersin.org
There has been a recent explosion of research within the field of microbial ecology that has
been fueled, in part, by methodological improvements that make it feasible to characterize …

The interplay between abiotic and biotic factors in dispersal decisions in metacommunities

M Thierry, J Cote, E Bestion… - Philosophical …, 2024 - royalsocietypublishing.org
Suitable conditions for species to survive and reproduce constitute their ecological niche,
which is built by abiotic conditions and interactions with conspecifics and heterospecifics …

Microbiomes as metacommunities: understanding host-associated microbes through metacommunity ecology

ET Miller, R Svanbäck, BJM Bohannan - Trends in Ecology & Evolution, 2018 - cell.com
Interest in host-associated microbiomes has skyrocketed recently, yet our ability to explain
microbiome variation has remained stubbornly low. Considering scales of interaction …

Phylogenetic clustering and overdispersion in bacterial communities

MC Horner-Devine, BJM Bohannan - Ecology, 2006 - Wiley Online Library
Very little is known about the structure of microbial communities, despite their abundance
and importance to ecosystem processes. Recent work suggests that bacterial biodiversity …

Beyond biogeographic patterns: processes shaping the microbial landscape

CA Hanson, JA Fuhrman, MC Horner-Devine… - Nature Reviews …, 2012 - nature.com
Recently, microbiologists have established the existence of biogeographic patterns among a
wide range of microorganisms. The focus of the field is now shifting to identifying the …

Evolution of dispersal in explicitly spatial metacommunities

R Muneepeerakul, S Azaele, SA Levin… - Journal of Theoretical …, 2011 - Elsevier
We apply an evolutionary game theoretic approach to the evolution of dispersal in explicitly
spatial metacommunities, using a flexible parametric class of dispersal kernels, namely 2Dt …

What microbial population genomics has taught us about speciation

BJ Shapiro - Population genomics: microorganisms, 2019 - Springer
Population genomics has emerged as a valuable tool to define and delimit species and to
understand the mechanisms that drive and maintain speciation. Species and speciation …

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

MF Polz, EJ Alm, WP Hanage - Trends in Genetics, 2013 - cell.com
Many bacterial and archaeal lineages have a history of extensive and ongoing horizontal
gene transfer and loss, as evidenced by the large differences in genome content even …

Life between patches: incorporating microbiome biology alters the predictions of metacommunity models

ET Miller, BJM Bohannan - Frontiers in Ecology and Evolution, 2019 - frontiersin.org
Although most models conceptualize a metacommunity as a collection of habitat patches
embedded in a matrix that is not hospitable to life, new applications of metacommunity …

Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …