How can microbial population genomics inform community ecology?

D VanInsberghe, P Arevalo… - … Transactions of the …, 2020 - royalsocietypublishing.org
Populations are fundamental units of ecology and evolution, but can we define them for
bacteria and archaea in a biologically meaningful way? Here, we review why population …

Microbial interactions and community assembly at microscales

OX Cordero, MS Datta - Current opinion in microbiology, 2016 - Elsevier
Highlights•Microbes form dense aggregates, where interactions may drive community
function.•Biological interactions can lead to spatial segregation or local mixing of …

Top-down and bottom-up cohesiveness in microbial community coalescence

J Diaz-Colunga, N Lu… - Proceedings of the …, 2022 - National Acad Sciences
Microbial communities frequently invade one another as a whole, a phenomenon known as
community coalescence. Despite its potential importance for the assembly, dynamics, and …

Relative dispersion ratios following fecal microbiota transplant elucidate principles governing microbial migration dynamics

YM Algavi, E Borenstein - Nature Communications, 2024 - nature.com
Microorganisms frequently migrate from one ecosystem to another. Yet, despite the potential
importance of this process in modulating the environment and the microbial ecosystem, our …

Mechanisms determining the fate of dispersed bacterial communities in new environments

AJ Székely, M Berga, S Langenheder - The ISME Journal, 2013 - academic.oup.com
Recent work has shown that dispersal has an important role in shaping microbial
communities. However, little is known about how dispersed bacteria cope with new …

Population genomics in natural microbial communities

RJ Whitaker, JF Banfield - Trends in Ecology & Evolution, 2006 - cell.com
Little is known about the evolutionary processes that structure and maintain microbial
diversity because, until recently, it was difficult to explore individual-level patterns of …

The source of microbial transmission influences niche colonization and microbiome development

IS Tanger, J Stefanschitz… - Proceedings of the …, 2024 - royalsocietypublishing.org
Early life microbial colonizers shape and support the immature vertebrate immune system.
Microbial colonization relies on the vertical route via parental provisioning and the horizontal …

The spatial organization of microbial communities during range expansion

W Liu, TA Tokuyasu, X Fu, C Liu - Current Opinion in Microbiology, 2021 - Elsevier
Microbes in nature often live in dense and diverse communities exhibiting a variety of spatial
structures. Microbial range expansion is a universal ecological process that enables …

Use of RNA and DNA to identify mechanisms of bacterial community homogenization

KM Meyer, IAB Petersen, E Tobi, L Korte… - Frontiers in …, 2019 - frontiersin.org
Biotic homogenization, ie, the increase in community similarity through time or space, is a
commonly observed response following conversion of native ecosystems to agriculture, but …

Microbial macroecology: In search of mechanisms governing microbial biogeographic patterns

X Xu, N Wang, D Lipson, R Sinsabaugh… - Global Ecology and …, 2020 - Wiley Online Library
Introduction Rapidly advancing technologies and accumulating information about microbial
communities across the globe allow the quantification of microbial properties and functions …