[HTML][HTML] Six degrees of epistasis: statistical network models for GWAS
BA McKinney, NM Pajewski - Frontiers in genetics, 2012 - frontiersin.org
There is growing evidence that much more of the genome than previously thought is
required to explain the heritability of complex phenotypes. Recent studies have …
required to explain the heritability of complex phenotypes. Recent studies have …
Network analysis of GWAS data
MDM Leiserson, JV Eldridge, S Ramachandran… - Current opinion in …, 2013 - Elsevier
Genome-wide association studies (GWAS) identify genetic variants that distinguish a control
population from a population with a specific trait. Two challenges in GWAS are:(1) …
population from a population with a specific trait. Two challenges in GWAS are:(1) …
Layers of epistasis: genome‐wide regulatory networks and network approaches to genome‐wide association studies
R Cowper‐Sal· lari, MD Cole… - … Systems Biology and …, 2011 - Wiley Online Library
The conceptual foundation of the genome‐wide association study (GWAS) has advanced
unchecked since its conception. A revision might seem premature as the potential of GWAS …
unchecked since its conception. A revision might seem premature as the potential of GWAS …
[HTML][HTML] Chapter 11: Genome-wide association studies
Genome-wide association studies (GWAS) have evolved over the last ten years into a
powerful tool for investigating the genetic architecture of human disease. In this work, we …
powerful tool for investigating the genetic architecture of human disease. In this work, we …
Post genome-wide association analysis: dissecting computational pathway/network-based approaches
Over thousands of genetic associations to diseases have been identified by genome-wide
association studies (GWASs), which conceptually is a single-marker-based approach. There …
association studies (GWASs), which conceptually is a single-marker-based approach. There …
Integration of biological networks and pathways with genetic association studies
YV Sun - Human genetics, 2012 - Springer
Millions of genetic variants have been assessed for their effects on the trait of interest in
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …
Strategies for pathway analysis from GWAS data
BL Yaspan, OJ Veatch - Current Protocols in Human Genetics, 2011 - Wiley Online Library
Genome‐wide association studies (GWAS) are a standard approach for investigating the
relationship of common variation within the human genome to a given phenotype of interest …
relationship of common variation within the human genome to a given phenotype of interest …
Association weight matrix: a network-based approach towards functional genome-wide association studies
A Reverter, MRS Fortes - Genome-Wide Association Studies and Genomic …, 2013 - Springer
In this chapter we describe the Association Weight Matrix (AWM), a novel procedure to
exploit the results from genome-wide association studies (GWAS) and, in combination with …
exploit the results from genome-wide association studies (GWAS) and, in combination with …
[HTML][HTML] Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits
The number of variants that have a non-zero effect on a trait (ie. polygenicity) is a
fundamental parameter in the study of the genetic architecture of a complex trait. Although …
fundamental parameter in the study of the genetic architecture of a complex trait. Although …
PGMRA: a web server for (phenotype× genotype) many-to-many relation analysis in GWAS
It has been proposed that single nucleotide polymorphisms (SNPs) discovered by genome-
wide association studies (GWAS) account for only a small fraction of the genetic variation of …
wide association studies (GWAS) account for only a small fraction of the genetic variation of …