[HTML][HTML] Six degrees of epistasis: statistical network models for GWAS

BA McKinney, NM Pajewski - Frontiers in genetics, 2012 - frontiersin.org
There is growing evidence that much more of the genome than previously thought is
required to explain the heritability of complex phenotypes. Recent studies have …

Network analysis of GWAS data

MDM Leiserson, JV Eldridge, S Ramachandran… - Current opinion in …, 2013 - Elsevier
Genome-wide association studies (GWAS) identify genetic variants that distinguish a control
population from a population with a specific trait. Two challenges in GWAS are:(1) …

Layers of epistasis: genome‐wide regulatory networks and network approaches to genome‐wide association studies

R Cowper‐Sal· lari, MD Cole… - … Systems Biology and …, 2011 - Wiley Online Library
The conceptual foundation of the genome‐wide association study (GWAS) has advanced
unchecked since its conception. A revision might seem premature as the potential of GWAS …

[HTML][HTML] Chapter 11: Genome-wide association studies

WS Bush, JH Moore - PLoS computational biology, 2012 - journals.plos.org
Genome-wide association studies (GWAS) have evolved over the last ten years into a
powerful tool for investigating the genetic architecture of human disease. In this work, we …

Post genome-wide association analysis: dissecting computational pathway/network-based approaches

ER Chimusa, S Dalvie, C Dandara… - Briefings in …, 2019 - academic.oup.com
Over thousands of genetic associations to diseases have been identified by genome-wide
association studies (GWASs), which conceptually is a single-marker-based approach. There …

Integration of biological networks and pathways with genetic association studies

YV Sun - Human genetics, 2012 - Springer
Millions of genetic variants have been assessed for their effects on the trait of interest in
genome-wide association studies (GWAS). The complex traits are affected by a set of inter …

Strategies for pathway analysis from GWAS data

BL Yaspan, OJ Veatch - Current Protocols in Human Genetics, 2011 - Wiley Online Library
Genome‐wide association studies (GWAS) are a standard approach for investigating the
relationship of common variation within the human genome to a given phenotype of interest …

Association weight matrix: a network-based approach towards functional genome-wide association studies

A Reverter, MRS Fortes - Genome-Wide Association Studies and Genomic …, 2013 - Springer
In this chapter we describe the Association Weight Matrix (AWM), a novel procedure to
exploit the results from genome-wide association studies (GWAS) and, in combination with …

[HTML][HTML] Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits

R Johnson, KS Burch, K Hou, M Paciuc… - PLoS computational …, 2021 - journals.plos.org
The number of variants that have a non-zero effect on a trait (ie. polygenicity) is a
fundamental parameter in the study of the genetic architecture of a complex trait. Although …

PGMRA: a web server for (phenotype× genotype) many-to-many relation analysis in GWAS

J Arnedo, C del Val, GA de Erausquin… - Nucleic Acids …, 2013 - academic.oup.com
It has been proposed that single nucleotide polymorphisms (SNPs) discovered by genome-
wide association studies (GWAS) account for only a small fraction of the genetic variation of …