Tracking alternative versions of the galactose gene network in the genus Saccharomyces and their expansion after domestication

A Pontes, F Paraíso, YC Liu, S Limtong… - Iscience, 2024 - cell.com
When Saccharomyces cerevisiae grows on mixtures of glucose and galactose, galactose
utilization is repressed by glucose, and induction of the GAL gene network only occurs when …

Reverse evolution of a classic gene network in yeast offers a competitive advantage

SF Duan, JY Shi, Q Yin, RP Zhang, PJ Han, QM Wang… - Current Biology, 2019 - cell.com
Glucose repression is a central regulatory system in yeast that ensures the utilization of
carbon sources in a highly economical manner. The galactose (GAL) metabolism network is …

Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network

S Ostergaard, L Olsson, M Johnston, J Nielsen - Nature biotechnology, 2000 - nature.com
Increasing the flux through central carbon metabolism is difficult because of rigidity in
regulatory structures, at both the genetic and the enzymatic levels. Here we describe …

Polygenic evolution of a sugar specialization trade-off in yeast

JI Roop, KC Chang, RB Brem - Nature, 2016 - nature.com
The evolution of novel traits can involve many mutations scattered throughout the genome,.
Detecting and validating such a suite of alleles, particularly if they arose long ago, remains a …

Long-Term Adaptation to Galactose as a Sole Carbon Source Selects for Mutations Outside the Canonical GAL Pathway

AA Martínez, A Conboy, SW Buskirk, DA Marad… - Journal of Molecular …, 2023 - Springer
Galactose is a secondary fermentable sugar that requires specific regulatory and structural
genes for its assimilation, which are under catabolite repression by glucose. When glucose …

The evolution of the GALactose utilization pathway in budding yeasts

MC Harrison, AL LaBella, CT Hittinger, A Rokas - Trends in Genetics, 2022 - cell.com
The Leloir galactose utilization or GAL pathway of budding yeasts, including that of the
baker's yeast Saccharomyces cerevisiae and the opportunistic human pathogen Candida …

High-resolution mutation mapping reveals parallel experimental evolution in yeast

AV Segrè, AW Murray, JY Leu - PLoS biology, 2006 - journals.plos.org
Understanding the genetic basis of evolutionary adaptation is limited by our ability to
efficiently identify the genomic locations of adaptive mutations. Here we describe a method …

A comparative analysis of the GAL genetic switch between not-so-distant cousins: Saccharomyces cerevisiae versus Kluyveromyces lactis

M Rubio-Texeira - FEMS yeast research, 2005 - academic.oup.com
Despite their close phylogenetic relationship, Kluyveromyces lactis and Saccharomyces
cerevisiae have adapted their carbon utilization systems to different environments. Although …

Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts

CT Hittinger, A Rokas… - Proceedings of the …, 2004 - National Acad Sciences
Understanding the evolutionary relationship between genome content and ecological niche
is one of the fundamental challenges of biology. The distinct physiologies of yeast species …

Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis

KK Hong, W Vongsangnak… - Proceedings of the …, 2011 - National Acad Sciences
Identification of the underlying molecular mechanisms for a derived phenotype by adaptive
evolution is difficult. Here, we performed a systems-level inquiry into the metabolic changes …