Looking at the disordered proteins through the computational microscope
Intrinsically disordered proteins (IDPs) have attracted wide interest over the past decade due
to their surprising prevalence in the proteome and versatile roles in cell physiology and …
to their surprising prevalence in the proteome and versatile roles in cell physiology and …
[HTML][HTML] Designed mutations alter the binding pathways of an intrinsically disordered protein
D Wu, HX Zhou - Scientific reports, 2019 - nature.com
Many cellular functions, including signaling and regulation, are carried out by intrinsically
disordered proteins (IDPs) binding to their targets. Experimental and computational studies …
disordered proteins (IDPs) binding to their targets. Experimental and computational studies …
[HTML][HTML] Introduction to intrinsically disordered proteins (IDPs)
VN Uversky - Chemical reviews, 2014 - ACS Publications
For more than a century, molecular and structural biology, biochemistry, and protein
biophysics have been dominated by a “rigid” or “semi-rigid” view of a functional protein …
biophysics have been dominated by a “rigid” or “semi-rigid” view of a functional protein …
[HTML][HTML] Illuminating intrinsically disordered proteins with integrative structural biology
R Evans, S Ramisetty, P Kulkarni, K Weninger - Biomolecules, 2023 - mdpi.com
Intense study of intrinsically disordered proteins (IDPs) did not begin in earnest until the late
1990s when a few groups, working independently, convinced the community that these …
1990s when a few groups, working independently, convinced the community that these …
[HTML][HTML] Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins
The focus of the computational structural biology community has taken a dramatic shift over
the past one-and-a-half decades from the classical protein structure prediction problem to …
the past one-and-a-half decades from the classical protein structure prediction problem to …
[HTML][HTML] Transient secondary structures as general target-binding motifs in intrinsically disordered proteins
DH Kim, KH Han - International Journal of Molecular Sciences, 2018 - mdpi.com
Intrinsically disordered proteins (IDPs) are unorthodox proteins that do not form three-
dimensional structures under non-denaturing conditions, but perform important biological …
dimensional structures under non-denaturing conditions, but perform important biological …
Dynamic protein interaction networks and new structural paradigms in signaling
Understanding signaling and other complex biological processes requires elucidating the
critical roles of intrinsically disordered proteins (IDPs) and regions (IDRs), which represent∼ …
critical roles of intrinsically disordered proteins (IDPs) and regions (IDRs), which represent∼ …
Intrinsically disordered proteins/regions and insight into their biomolecular interactions
P Chakrabarti, D Chakravarty - Biophysical Chemistry, 2022 - Elsevier
Proteins may vary from being rigid to having flexible regions to being completely disordered,
either as an intrinsically disordered protein (IDP) or having specific intrinsically disordered …
either as an intrinsically disordered protein (IDP) or having specific intrinsically disordered …
[HTML][HTML] Disordered proteinaceous machines
Many full-length proteins and protein regions lack stable tertiary and/or secondary structure
under physiological conditions in vitro. These proteins and regions, known as intrinsically …
under physiological conditions in vitro. These proteins and regions, known as intrinsically …
Backbone conformational preferences of an intrinsically disordered protein in solution
LM Espinoza-Fonseca, I Ilizaliturri-Flores… - Molecular …, 2012 - pubs.rsc.org
We have performed a 4-μs molecular dynamics simulation to investigate the native
conformational preferences of the intrinsically disordered kinase-inducible domain (KID) of …
conformational preferences of the intrinsically disordered kinase-inducible domain (KID) of …