Looking at the disordered proteins through the computational microscope

P Das, S Matysiak, J Mittal - ACS central science, 2018 - ACS Publications
Intrinsically disordered proteins (IDPs) have attracted wide interest over the past decade due
to their surprising prevalence in the proteome and versatile roles in cell physiology and …

[HTML][HTML] Designed mutations alter the binding pathways of an intrinsically disordered protein

D Wu, HX Zhou - Scientific reports, 2019 - nature.com
Many cellular functions, including signaling and regulation, are carried out by intrinsically
disordered proteins (IDPs) binding to their targets. Experimental and computational studies …

[HTML][HTML] Introduction to intrinsically disordered proteins (IDPs)

VN Uversky - Chemical reviews, 2014 - ACS Publications
For more than a century, molecular and structural biology, biochemistry, and protein
biophysics have been dominated by a “rigid” or “semi-rigid” view of a functional protein …

[HTML][HTML] Illuminating intrinsically disordered proteins with integrative structural biology

R Evans, S Ramisetty, P Kulkarni, K Weninger - Biomolecules, 2023 - mdpi.com
Intense study of intrinsically disordered proteins (IDPs) did not begin in earnest until the late
1990s when a few groups, working independently, convinced the community that these …

[HTML][HTML] Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins

S Basu, F Söderquist, B Wallner - Journal of computer-aided molecular …, 2017 - Springer
The focus of the computational structural biology community has taken a dramatic shift over
the past one-and-a-half decades from the classical protein structure prediction problem to …

[HTML][HTML] Transient secondary structures as general target-binding motifs in intrinsically disordered proteins

DH Kim, KH Han - International Journal of Molecular Sciences, 2018 - mdpi.com
Intrinsically disordered proteins (IDPs) are unorthodox proteins that do not form three-
dimensional structures under non-denaturing conditions, but perform important biological …

Dynamic protein interaction networks and new structural paradigms in signaling

V Csizmok, AV Follis, RW Kriwacki… - Chemical …, 2016 - ACS Publications
Understanding signaling and other complex biological processes requires elucidating the
critical roles of intrinsically disordered proteins (IDPs) and regions (IDRs), which represent∼ …

Intrinsically disordered proteins/regions and insight into their biomolecular interactions

P Chakrabarti, D Chakravarty - Biophysical Chemistry, 2022 - Elsevier
Proteins may vary from being rigid to having flexible regions to being completely disordered,
either as an intrinsically disordered protein (IDP) or having specific intrinsically disordered …

[HTML][HTML] Disordered proteinaceous machines

M Fuxreiter, A Tóth-Petróczy, DA Kraut… - Chemical …, 2014 - ACS Publications
Many full-length proteins and protein regions lack stable tertiary and/or secondary structure
under physiological conditions in vitro. These proteins and regions, known as intrinsically …

Backbone conformational preferences of an intrinsically disordered protein in solution

LM Espinoza-Fonseca, I Ilizaliturri-Flores… - Molecular …, 2012 - pubs.rsc.org
We have performed a 4-μs molecular dynamics simulation to investigate the native
conformational preferences of the intrinsically disordered kinase-inducible domain (KID) of …