[HTML][HTML] Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the …
Recent developments in high-throughput sequencing technology have made low-cost
sequencing an attractive approach for many genome analysis tasks. Increasing read …
sequencing an attractive approach for many genome analysis tasks. Increasing read …
[HTML][HTML] Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data
Next Generation Sequencing (NGS) is a disruptive technology that has found widespread
acceptance in the life sciences research community. The high throughput and low cost of …
acceptance in the life sciences research community. The high throughput and low cost of …
Advancements in long-read genome sequencing technologies and algorithms
The recent advent of long read sequencing technologies, such as Pacific Biosciences
(PacBio) and Oxford Nanopore technology (ONT), have led to substantial improvements in …
(PacBio) and Oxford Nanopore technology (ONT), have led to substantial improvements in …
[HTML][HTML] Whole-genome sequencing and assembly with high-throughput, short-read technologies
While recently developed short-read sequencing technologies may dramatically reduce the
sequencing cost and eventually achieve the $1000 goal for re-sequencing, their limitations …
sequencing cost and eventually achieve the $1000 goal for re-sequencing, their limitations …
Assembly of large genomes using second-generation sequencing
MC Schatz, AL Delcher, SL Salzberg - Genome research, 2010 - genome.cshlp.org
Second-generation sequencing technology can now be used to sequence an entire human
genome in a matter of days and at low cost. Sequence read lengths, initially very short, have …
genome in a matter of days and at low cost. Sequence read lengths, initially very short, have …
Assemblathon 1: a competitive assessment of de novo short read assembly methods
Low-cost short read sequencing technology has revolutionized genomics, though it is only
just becoming practical for the high-quality de novo assembly of a novel large genome. We …
just becoming practical for the high-quality de novo assembly of a novel large genome. We …
GAGE: A critical evaluation of genome assemblies and assembly algorithms
New sequencing technology has dramatically altered the landscape of whole-genome
sequencing, allowing scientists to initiate numerous projects to decode the genomes of …
sequencing, allowing scientists to initiate numerous projects to decode the genomes of …
Exploring genome characteristics and sequence quality without a reference
JT Simpson - Bioinformatics, 2014 - academic.oup.com
Motivation: The de novo assembly of large, complex genomes is a significant challenge with
currently available DNA sequencing technology. While many de novo assembly software …
currently available DNA sequencing technology. While many de novo assembly software …
[HTML][HTML] A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies
The advent of next-generation sequencing technologies is accompanied with the
development of many whole-genome sequence assembly methods and software, especially …
development of many whole-genome sequence assembly methods and software, especially …
Versatile genome assembly evaluation with QUAST-LG
Motivation The emergence of high-throughput sequencing technologies revolutionized
genomics in early 2000s. The next revolution came with the era of long-read sequencing …
genomics in early 2000s. The next revolution came with the era of long-read sequencing …