Incomplete lineage sorting and gene flow within Allium (Amayllidaceae)

ZZ Zhang, G Liu, M Li - Molecular Phylogenetics and Evolution, 2024 - Elsevier
The phylogeny and systematics of the genus Allium have been studied with a variety of
diverse data types, including an increasing amount of molecular data. However, strong …

Phylogeny and highland adaptation of Chinese species in Allium section Daghestanica (Amaryllidaceae) revealed by transcriptome sequencing

DF Xie, Y Yu, J Wen, J Huang, JP Chen, J Li… - Molecular phylogenetics …, 2020 - Elsevier
Allium L. is one of the largest monocotyledonous genera with extensive distribution in the
Northern Hemisphere. The fundamental phylogenies of Allium have been investigated using …

[HTML][HTML] Phylotranscriptomic discordance is best explained by incomplete lineage sorting within Allium subgenus Cyathophora and thus hemiplasy accounts for …

Z Zhang, G Liu, M Li - Plant Diversity, 2024 - Elsevier
The transition of traits between genetically related lineages is a fascinating topic that
provides clues to understanding the drivers of speciation and diversification. Much can be …

Phylogenetic and phylogenomic studies of wild onions (Allium, Amaryllidaceae) at three taxonomic scales

E Wheeler - 2011 - mospace.umsystem.edu
I used standard molecular phylogenetic and emerging phylogenomic methods to address
questions about the evolutionary relationships among populations, species and subgeneric …

[HTML][HTML] Integrating high-volume molecular and morphological data into the evolutionary studies of Allium

XJ He - Plant Diversity, 2024 - ncbi.nlm.nih.gov
The genus Allium (Amaryllidaceae), which includes economically important plants such as
onions, garlic, and leeks, is one of the most species-rich and diverse genera of …

[HTML][HTML] Phylogenomic analyses and chromosome ploidy identification reveal multiple cryptic species in Allium sikkimense complex (Amaryllidaceae)

DQ Huang, XG Ma, H Sun - Frontiers in Plant Science, 2024 - frontiersin.org
Polyploidization is a process that typically leads to instantaneous reproductive isolation and
has, therefore, been considered as one of the major evolutionary forces in the species-rich …

Divide to conquer: evolutionary history of Allioideae tribes (Amaryllidaceae) is linked to distinct trends of karyotype evolution

L Costa, H Jimenez, R Carvalho… - Frontiers in Plant …, 2020 - frontiersin.org
Allioideae (eg, chives, garlics, onions) comprises three mainly temperate tribes: Allieae (800
species from the northern hemisphere), Gilliesieae (80 South American species), and …

Insights into phylogeny, age and evolution of Allium (Amaryllidaceae) based on the whole plastome sequences

DF Xie, JB Tan, Y Yu, LJ Gui, DM Su, SD Zhou… - Annals of …, 2020 - academic.oup.com
Abstract Background and Aims The genus Allium L., one of the largest monocotyledonous
genera and one that includes many economically important crops with nutritional and …

Restriction fragment length polymorphisms reveal considerable nuclear divergence within a well‐supported maternal clade in allium section Cepa (Alliaceae)

JM Bradeen, MJ Havey - American Journal of Botany, 1995 - Wiley Online Library
Maternal phylogenies estimated by restriction fragment length polymorphisms (RFLPs) in
the chloroplast DNA (cpDNA) delineated a well‐supported clade containing Allium altaicum …

Species–level phylogeny of Allium subgenus Melanocrommyum: Incomplete lineage sorting, hybridization and trnF gene duplication

M Gurushidze, RM Fritsch, FR Blattner - Taxon, 2010 - Wiley Online Library
Noncoding chloroplast DNA sequences are widely employed markers in plant species–level
phylogenetics and phylogeography. However, chloroplast capture (hybridization) and …