Simultaneous profiling of chromatin architecture and transcription in single cells

J Qu, J Sun, C Zhao, X Liu, X Zhang, S Jiang… - Nature Structural & …, 2023 - nature.com
The three-dimensional structure of chromatin plays a crucial role in development and
disease, both of which are associated with transcriptional changes. However, given the …

Chromatin architecture reorganization during stem cell differentiation

JR Dixon, I Jung, S Selvaraj, Y Shen… - Nature, 2015 - nature.com
Higher-order chromatin structure is emerging as an important regulator of gene expression.
Although dynamic chromatin structures have been identified in the genome, the full scope of …

Spatial organization of chromatin: emergence of chromatin structure during development

RP Ghosh, BJ Meyer - Annual review of cell and developmental …, 2021 - annualreviews.org
Nuclei are central hubs for information processing in eukaryotic cells. The need to fit large
genomes into small nuclei imposes severe restrictions on genome organization and the …

Linking genome structures to functions by simultaneous single-cell Hi-C and RNA-seq

Z Liu, Y Chen, Q Xia, M Liu, H Xu, Y Chi, Y Deng… - Science, 2023 - science.org
Much progress has been made recently in single-cell chromosome conformation capture
technologies. However, a method that allows simultaneous profiling of chromatin …

[HTML][HTML] Genome-scale imaging of the 3D organization and transcriptional activity of chromatin

JH Su, P Zheng, SS Kinrot, B Bintu, X Zhuang - Cell, 2020 - cell.com
The 3D organization of chromatin regulates many genome functions. Our understanding of
3D genome organization requires tools to directly visualize chromatin conformation in its …

[HTML][HTML] High-resolution genome-wide mapping of the primary structure of chromatin

Z Zhang, BF Pugh - Cell, 2011 - cell.com
The genomic organization of chromatin is increasingly recognized as a key regulator of cell
behavior, but deciphering its regulation mechanisms requires detailed knowledge of …

Resolving the 3D landscape of transcription-linked mammalian chromatin folding

THS Hsieh, C Cattoglio, E Slobodyanyuk, AS Hansen… - Molecular cell, 2020 - cell.com
Whereas folding of genomes at the large scale of epigenomic compartments and
topologically associating domains (TADs) is now relatively well understood, how chromatin …

Simultaneous profiling of 3D genome structure and DNA methylation in single human cells

DS Lee, C Luo, J Zhou, S Chandran, A Rivkin… - Nature …, 2019 - nature.com
Dynamic three-dimensional chromatin conformation is a critical mechanism for gene
regulation during development and disease. Despite this, profiling of three-dimensional …

[HTML][HTML] Chromatin potential identified by shared single-cell profiling of RNA and chromatin

S Ma, B Zhang, LM LaFave, AS Earl, Z Chiang, Y Hu… - Cell, 2020 - cell.com
Cell differentiation and function are regulated across multiple layers of gene regulation,
including modulation of gene expression by changes in chromatin accessibility. However …

Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin

E Miron, R Oldenkamp, JM Brown, DMS Pinto… - Science …, 2020 - science.org
Three-dimensional (3D) chromatin organization plays a key role in regulating mammalian
genome function; however, many of its physical features at the single-cell level remain …