Complementing ultrafast shape recognition with an optical isomerism descriptor
T Zhou, K Lafleur, A Caflisch - Journal of Molecular Graphics and Modelling, 2010 - Elsevier
We introduce the mixed product of three vectors spanning four molecular locations as a
descriptor of optical isomerism. This descriptor is very efficient as it does not require …
descriptor of optical isomerism. This descriptor is very efficient as it does not require …
Constant size descriptors for accurate machine learning models of molecular properties
Two different classes of molecular representations for use in machine learning of
thermodynamic and electronic properties are studied. The representations are evaluated by …
thermodynamic and electronic properties are studied. The representations are evaluated by …
Matrix‐based molecular descriptors for prospective virtual compound screening
Molecular descriptors capture diverse structural information of molecules and are a
prerequisite for ligand‐based similarity searching. In this study, we introduce topological …
prerequisite for ligand‐based similarity searching. In this study, we introduce topological …
Auto-QChem: an automated workflow for the generation and storage of DFT calculations for organic molecules
This perspective describes Auto-QChem, an automatic, high-throughput and end-to-end
DFT calculation workflow that computes chemical descriptors for organic molecules …
DFT calculation workflow that computes chemical descriptors for organic molecules …
[HTML][HTML] Applying machine learning to ultrafast shape recognition in ligand-based virtual screening
E Bonanno, JP Ebejer - Frontiers in pharmacology, 2020 - frontiersin.org
Ultrafast Shape Recognition (USR), along with its derivatives, are Ligand-Based Virtual
Screening (LBVS) methods that condense 3-dimensional information about molecular …
Screening (LBVS) methods that condense 3-dimensional information about molecular …
Can we separate active from inactive conformations?
DJ Diller, KM Merz - Journal of computer-aided molecular design, 2002 - Springer
Molecular modeling methodologies such as molecular docking, pharmacophore modeling,
and 3D-QSAR, rely on conformational searches of small molecules as a starting point. All of …
and 3D-QSAR, rely on conformational searches of small molecules as a starting point. All of …
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics
Research applications in chemoinformatics and toxicoinformatics increasingly use
representations of molecules in the form of numerical descriptors that capture the structural …
representations of molecules in the form of numerical descriptors that capture the structural …
On entropy-based molecular descriptors: Statistical analysis of real and synthetic chemical structures
This paper presents an analysis of entropy-based molecular descriptors. Specifically, we
use real chemical structures, as well as synthetic isomeric structures, and investigate …
use real chemical structures, as well as synthetic isomeric structures, and investigate …
Development of new hydrogen-bond descriptors and their application to comparative molecular field analyses
Knowledge-based descriptors extracted from composite crystal-field environments in crystal
data have been developed for the description of interaction properties of small molecules …
data have been developed for the description of interaction properties of small molecules …
Development of 3-dimensional molecular descriptors
M Randić, B Jerman-Blaẑić, N Trinajstić - Computers & chemistry, 1990 - Elsevier
Structural invariants used currently as molecular descriptors in structure-property (SPR) and
structure-activity relationship (SAR) studies are based on molecular graphs rather than on a …
structure-activity relationship (SAR) studies are based on molecular graphs rather than on a …