Along the allostery stream: Recent advances in computational methods for allosteric drug discovery
D Ni, Z Chai, Y Wang, M Li, Z Yu, Y Liu… - Wiley …, 2022 - Wiley Online Library
Allostery is a universal, biological phenomenon in which orthosteric sites are fine‐tuned by
topologically distal allosteric sites triggered by perturbations, such as ligand binding, residue …
topologically distal allosteric sites triggered by perturbations, such as ligand binding, residue …
Drugs for allosteric sites on receptors
The presence of druggable, topographically distinct allosteric sites on a wide range of
receptor families has offered new paradigms for small molecules to modulate receptor …
receptor families has offered new paradigms for small molecules to modulate receptor …
Revolutionizing peptide‐based drug discovery: Advances in the post‐AlphaFold era
Peptide‐based drugs offer high specificity, potency, and selectivity. However, their inherent
flexibility and differences in conformational preferences between their free and bound states …
flexibility and differences in conformational preferences between their free and bound states …
[HTML][HTML] AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis
JG Greener, MJE Sternberg - BMC bioinformatics, 2015 - Springer
Background Despite being hugely important in biological processes, allostery is poorly
understood and no universal mechanism has been discovered. Allosteric drugs are a largely …
understood and no universal mechanism has been discovered. Allosteric drugs are a largely …
Unraveling structural mechanisms of allosteric drug action
R Nussinov, CJ Tsai - Trends in pharmacological sciences, 2014 - cell.com
Orthosteric drugs block the active site to obstruct function; allosteric drugs modify the
population of the active state, to modulate function. Available data lead us to propose that …
population of the active state, to modulate function. Available data lead us to propose that …
Are deep learning structural models sufficiently accurate for virtual screening? application of docking algorithms to AlphaFold2 predicted structures
AM Díaz-Rovira, H Martín, T Beuming… - Journal of Chemical …, 2023 - ACS Publications
Machine learning-based protein structure prediction algorithms, such as RosettaFold and
AlphaFold2, have greatly impacted the structural biology field, arousing a fair amount of …
AlphaFold2, have greatly impacted the structural biology field, arousing a fair amount of …
A biophysical framework for double-drugging kinases
C Kim, H Ludewig, A Hadzipasic… - Proceedings of the …, 2023 - National Acad Sciences
Selective orthosteric inhibition of kinases has been challenging due to the conserved active
site architecture of kinases and emergence of resistance mutants. Simultaneous inhibition of …
site architecture of kinases and emergence of resistance mutants. Simultaneous inhibition of …
Emerging computational methods for the rational discovery of allosteric drugs
Allosteric drug development holds promise for delivering medicines that are more selective
and less toxic than those that target orthosteric sites. To date, the discovery of allosteric …
and less toxic than those that target orthosteric sites. To date, the discovery of allosteric …
[HTML][HTML] Integrated computational approaches and tools for allosteric drug discovery
O Sheik Amamuddy, W Veldman, C Manyumwa… - International journal of …, 2020 - mdpi.com
Understanding molecular mechanisms underlying the complexity of allosteric regulation in
proteins has attracted considerable attention in drug discovery due to the benefits and …
proteins has attracted considerable attention in drug discovery due to the benefits and …
Exploring and exploiting allostery: Models, evolution, and drug targeting
A Peracchi, A Mozzarelli - Biochimica et Biophysica Acta (BBA)-Proteins …, 2011 - Elsevier
The concept of allostery was elaborated almost 50years ago by Monod and coworkers to
provide a framework for interpreting experimental studies on the regulation of protein …
provide a framework for interpreting experimental studies on the regulation of protein …