Structure of linkage disequilibrium and phenotypic associations in the maize genome

DL Remington, JM Thornsberry… - Proceedings of the …, 2001 - National Acad Sciences
Association studies based on linkage disequilibrium (LD) can provide high resolution for
identifying genes that may contribute to phenotypic variation. We report patterns of local and …

SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines

ADA Ching, KS Caldwell, M Jung, M Dolan… - BMC genetics, 2002 - Springer
Background Recent studies of ancestral maize populations indicate that linkage
disequilibrium tends to dissipate rapidly, sometimes within 100 bp. We set out to examine …

Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)

MI Tenaillon, MC Sawkins, AD Long… - Proceedings of the …, 2001 - National Acad Sciences
We measured sequence diversity in 21 loci distributed along chromosome 1 of maize (Zea
mays ssp. mays L.). For each locus, we sequenced a common sample of 25 individuals …

Comprehensive genotyping of the USA national maize inbred seed bank

MC Romay, MJ Millard, JC Glaubitz, JA Peiffer… - Genome biology, 2013 - Springer
Background Genotyping by sequencing, a new low-cost, high-throughput sequencing
technology was used to genotype 2,815 maize inbred accessions, preserved mostly at the …

Genetic properties of the maize nested association mapping population

MD McMullen, S Kresovich, HS Villeda, P Bradbury… - Science, 2009 - science.org
Maize genetic diversity has been used to understand the molecular basis of phenotypic
variation and to improve agricultural efficiency and sustainability. We crossed 25 diverse …

Maize association population: a high‐resolution platform for quantitative trait locus dissection

SA Flint‐Garcia, AC Thuillet, J Yu, G Pressoir… - The plant …, 2005 - Wiley Online Library
Crop improvement and the dissection of complex genetic traits require germplasm diversity.
Although this necessary phenotypic variability exists in diverse maize, most research is …

Linkage disequilibrium in European elite maize germplasm investigated with SSRs

B Stich, AE Melchinger, M Frisch, HP Maurer… - Theoretical and Applied …, 2005 - Springer
Abstract Information about the extent and genomic distribution of linkage disequilibrium (LD)
is of fundamental importance for association mapping. The main objectives of this study …

The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population

HY Hung, C Browne, K Guill, N Coles, M Eller, A Garcia… - Heredity, 2012 - nature.com
Appropriate selection of parents for the development of mapping populations is pivotal to
maximizing the power of quantitative trait loci detection. Trait genotypic variation within a …

Association Mapping for Enhancing Maize (Zea mays L.) Genetic Improvement

J Yan, M Warburton, J Crouch - Crop science, 2011 - Wiley Online Library
Association mapping through linkage disequilibrium (LD) analysis is a powerful tool for the
dissection of complex agronomic traits and for the identification of alleles that can contribute …

Highly variable patterns of linkage disequilibrium in multiple soybean populations

DL Hyten, IY Choi, Q Song, RC Shoemaker… - Genetics, 2007 - academic.oup.com
Prospects for utilizing whole-genome association analysis in autogamous plant populations
appear promising due to the reported high levels of linkage disequilibrium (LD). To …