[HTML][HTML] Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach
Background Genome rearrangements influence gene order and configuration of gene
clusters in all genomes. Most land plant chloroplast DNAs (cpDNAs) share a highly …
clusters in all genomes. Most land plant chloroplast DNAs (cpDNAs) share a highly …
Probabilistic analysis indicates discordant gene trees in chloroplast evolution
Analyses of whole-genome data often reveal that some genes have evolutionary histories
that diverge from the majority phylogeny estimated for the entire genome. We present a …
that diverge from the majority phylogeny estimated for the entire genome. We present a …
[HTML][HTML] Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat
Background Genome evolution is shaped not only by nucleotide substitutions, but also by
structural changes including gene and genome duplications, insertions, deletions and gene …
structural changes including gene and genome duplications, insertions, deletions and gene …
Genes translocated into the plastid inverted repeat show decelerated substitution rates and elevated GC content
Plant chloroplast genomes (plastomes) are characterized by an inverted repeat (IR) region
and two larger single copy (SC) regions. Patterns of molecular evolution in the IR and SC …
and two larger single copy (SC) regions. Patterns of molecular evolution in the IR and SC …
Rates and patterns of chloroplast DNA evolution.
The chloroplast genome (cpDNA) of plants has been a focus of research in plant molecular
evolution and systematics. Several features of this genome have facilitated molecular …
evolution and systematics. Several features of this genome have facilitated molecular …
[PDF][PDF] The evolutionary constraints on angiosperm chloroplast adaptation
EHJ Robbins, S Kelly - Genome Biology and Evolution, 2023 - academic.oup.com
The chloroplast (plastid) arose via the endosymbiosis of a photosynthetic cyanobacterium by
a nonphotosynthetic eukaryotic cell∼ 1.5 billion years ago. Although the plastid underwent …
a nonphotosynthetic eukaryotic cell∼ 1.5 billion years ago. Although the plastid underwent …
Long-reads reveal that the chloroplast genome exists in two distinct versions in most plants
The chloroplast genome usually has a quadripartite structure consisting of a large single
copy region and a small single copy region separated by two long inverted repeats. It has …
copy region and a small single copy region separated by two long inverted repeats. It has …
[HTML][HTML] The Broken Chloroplast Gene Clusters in Gymnosperms Exhibit Elevated Substitution Rates
J Ping, X Zhong, T Wang, Y Su - Forests, 2023 - mdpi.com
Plant chloroplast (cp) gene clusters consist of genes arranged closely together on the cp
genome. These genes are organized in operon structures and participate in cotranscription …
genome. These genes are organized in operon structures and participate in cotranscription …
[HTML][HTML] Dynamics of chloroplast genomes in green plants
JH Xu, Q Liu, W Hu, T Wang, Q Xue, J Messing - Genomics, 2015 - Elsevier
Chloroplasts are essential organelles, in which genes have widely been used in the
phylogenetic analysis of green plants. Here, we took advantage of the breadth of plastid …
phylogenetic analysis of green plants. Here, we took advantage of the breadth of plastid …
Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants
JW Lilly, MJ Havey, SA Jackson, J Jiang - The Plant Cell, 2001 - academic.oup.com
A DNA fiber-based fluorescence in situ hybridization (fiber-FISH) technique was developed
to analyze the structure and organization of a large number of intact chloroplast DNA …
to analyze the structure and organization of a large number of intact chloroplast DNA …
相关搜索
- chloroplast genome structure
- green plants chloroplast genomes
- chloroplast genome most plants
- chloroplast genome higher plants
- inverted repeat chloroplast genomes
- chloroplast genome cytogenomic analyses
- chloroplast genome long reads
- chloroplast evolution gene trees
- chloroplast evolution probabilistic analysis
- probabilistic analysis gene trees