Pseudogenes and their genome-wide prediction in plants
J Xiao, MK Sekhwal, P Li, R Ragupathy… - International Journal of …, 2016 - mdpi.com
Pseudogenes are paralogs generated from ancestral functional genes (parents) during
genome evolution, which contain critical defects in their sequences, such as lacking a …
genome evolution, which contain critical defects in their sequences, such as lacking a …
Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice
C Zou, MD Lehti-Shiu, F Thibaud-Nissen… - Plant …, 2009 - academic.oup.com
Pseudogenes (Ψ) are nonfunctional genomic sequences resembling functional genes.
Knowledge of Ψs can improve genome annotation and our understanding of genome …
Knowledge of Ψs can improve genome annotation and our understanding of genome …
Lowly Expressed Genes in Arabidopsis thaliana Bear the Signature of Possible Pseudogenization by Promoter Degradation
Pseudogenes are defined as nonfunctional DNA sequences with homology to functional
protein-coding genes, and they typically contain nonfunctional mutations within the …
protein-coding genes, and they typically contain nonfunctional mutations within the …
Current trends in pseudogene detection and characterization
EC Rouchka, IE Cha - Current Bioinformatics, 2009 - ingentaconnect.com
Pseudogenes are homologous relatives of known genes that have lost their ability to
function as a transcriptional unit. Three classes of pseudogenes are known to exist …
function as a transcriptional unit. Three classes of pseudogenes are known to exist …
Gene prediction and gene classes in Arabidopsis thaliana
C Mathé, P Déhais, N Pavy, S Rombauts… - Journal of …, 2000 - Elsevier
Gene prediction methods for eukaryotic genomes still are not fully satisfying. One way to
improve gene prediction accuracy, proven to be relevant for prokaryotes, is to consider more …
improve gene prediction accuracy, proven to be relevant for prokaryotes, is to consider more …
Genome-Wide Survey of Pseudogenes in 80 Fully Re-sequenced Arabidopsis thaliana Accessions
Pseudogenes (Ψs), including processed and non-processed Ψs, are ubiquitous genetic
elements derived from originally functional genes in all studied genomes within the three …
elements derived from originally functional genes in all studied genomes within the three …
Evolutionary origins of pseudogenes and their association with regulatory sequences in plants
J Xie, Y Li, X Liu, Y Zhao, B Li, PK Ingvarsson… - The Plant …, 2019 - academic.oup.com
Pseudogenes (Ψs), nonfunctional relatives of functional genes, form by duplication or
retrotransposition, and loss of gene function by disabling mutations. Evolutionary analysis …
retrotransposition, and loss of gene function by disabling mutations. Evolutionary analysis …
Origination and function of plant pseudogenes
J Xie, S Chen, W Xu, Y Zhao, D Zhang - Plant signaling & behavior, 2019 - Taylor & Francis
Pseudogenes, nonfunctional genomic sequences derived from functional protein-coding
genes, form by duplication or retrotransposition, and loss of gene function by disabling …
genes, form by duplication or retrotransposition, and loss of gene function by disabling …
Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome
WA Moskal, HC Wu, BA Underwood, W Wang… - BMC genomics, 2007 - Springer
Background Several lines of evidence support the existence of novel genes and other
transcribed units which have not yet been annotated in the Arabidopsis genome. Two gene …
transcribed units which have not yet been annotated in the Arabidopsis genome. Two gene …
[PDF][PDF] Improved techniques for the identification of pseudogenes
Motivation: Pseudogenes are the remnants of genomic sequences of genes which are no
longer functional. They are frequent in most eukaryotic genomes, and an important resource …
longer functional. They are frequent in most eukaryotic genomes, and an important resource …