[HTML][HTML] Beyond the data deluge: data integration and bio-ontologies

JA Blake, CJ Bult - Journal of biomedical informatics, 2006 - Elsevier
Biomedical research is increasingly a data-driven science. New technologies support the
generation of genome-scale data sets of sequences, sequence variants, transcripts, and …

A vision for collaborative training infrastructure for bioinformatics

JJ Williams, TK Teal - Annals of the New York Academy of …, 2017 - Wiley Online Library
In biology, a missing link connecting data generation and data‐driven discovery is the
training that prepares researchers to effectively manage and analyze data. National and …

An open source knowledge graph ecosystem for the life sciences

TJ Callahan, IJ Tripodi, AL Stefanski, L Cappelletti… - Scientific Data, 2024 - nature.com
Translational research requires data at multiple scales of biological organization.
Advancements in sequencing and multi-omics technologies have increased the availability …

Applying, evaluating and refining bioinformatics core competencies (an update from the curriculum task force of ISCB's education committee)

L Welch, C Brooksbank, R Schwartz… - PLoS computational …, 2016 - journals.plos.org
The Curriculum Task Force (CTF) of ISCB's Education Committee seeks to define curricular
guidelines for those who educate or train bioinformatics professionals at all career stages. A …

Knowledge Base Commons (KBCommons) v1. 0: A multi OMICS'web-based data integration framework for biological discoveries

S Zeng, Z Lyu, SRK Narisetti, D Xu… - 2018 IEEE International …, 2018 - ieeexplore.ieee.org
Knowledge Base Commons (KBCommons) v1. 0 provides a comprehensive web resource
for storing, sharing, analyzing, exploring, and visualizing multi-organism genomics and multi …

Biological knowledge management: the emerging role of the Semantic Web technologies

E Antezana, M Kuiper, V Mironov - Briefings in bioinformatics, 2009 - academic.oup.com
New knowledge is produced at a continuously increasing speed, and the list of papers,
databases and other knowledge sources that a researcher in the life sciences needs to cope …

Promoting synergistic research and education in genomics and bioinformatics

JY Yang, MQ Yang, MM Zhu, HR Arabnia, Y Deng - BMC genomics, 2008 - Springer
Bioinformatics and Genomics are closely related disciplines that hold great promises for the
advancement of research and development in complex biomedical systems, as well as …

CyVerse: Cyberinfrastructure for open science

TL Swetnam, PB Antin, R Bartelme… - PLoS Computational …, 2024 - journals.plos.org
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life
sciences, has played a crucial role in advancing data-driven research since the 2010s. As …

Biomolecular data resources: Bioinformatics infrastructure for biomedical data science

J Vamathevan, R Apweiler… - Annual Review of …, 2019 - annualreviews.org
Technological advances have continuously driven the generation of bio-molecular data and
the development of bioinformatics infrastructure, which enables data reuse for scientific …

Grand challenges in bioinformatics education and training

EB Işık, MD Brazas, R Schwartz, B Gaeta… - Nature …, 2023 - nature.com
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