Evolution of complex genome architecture in gymnosperms

T Wan, Y Gong, Z Liu, YD Zhou, C Dai, Q Wang - GigaScience, 2022 - academic.oup.com
Gymnosperms represent an ancient lineage that diverged from early spermatophytes during
the Devonian. The long fossil records and low diversity in living species prove their complex …

Ancestral gene flow and parallel organellar genome capture result in extreme phylogenomic discord in a lineage of angiosperms

RA Folk, JR Mandel, JV Freudenstein - Systematic biology, 2017 - academic.oup.com
While hybridization has recently received a resurgence of attention from systematists and
evolutionary biologists, there remains a dearth of case studies on ancient, diversified hybrid …

10KP: A phylodiverse genome sequencing plan

S Cheng, M Melkonian, SA Smith, S Brockington… - …, 2018 - academic.oup.com
Understanding plant evolution and diversity in a phylogenomic context is an enormous
challenge due, in part, to limited availability of genome-scale data across phylodiverse …

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

JG Burleigh, MS Bansal, O Eulenstein… - Systematic …, 2011 - academic.oup.com
Phylogenetic analyses using genome-scale data sets must confront incongruence among
gene trees, which in plants is exacerbated by frequent gene duplications and losses. Gene …

[图书][B] Phylogeny and Evolution of the Angiosperms

D Soltis, P Soltis, P Endress, M Chase, S Manchester… - 2018 - books.google.com
Although they are relative latecomers on the evolutionary scene, having emerged only 135?
170 million years ago, angiosperms—or flowering plants—are the most diverse and species …

Key questions and challenges in angiosperm macroevolution

H Sauquet, S Magallón - New Phytologist, 2018 - Wiley Online Library
Contents Summary 1170 I. Introduction 1170 II. Six key questions 1172 III. Three key
challenges 1177 IV. Conclusions 1181 Acknowledgements 1182 References 1183 …

Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms

JH Ran, TT Shen, MM Wang… - Proceedings of the …, 2018 - royalsocietypublishing.org
After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has
not been resolved, and the phylogenetic placement of Gnetales remains one of the most …

Ancestors of modern plant crops

J Salse - Current Opinion in Plant Biology, 2016 - Elsevier
Highlights•Angiosperms derive from MRCAs structured in 7 protochromosomes with∼ 10
000 protogenes.•Modern plant genomes evolved from MRCAs through recurrent …

Nuclear genomes of two magnoliids

DE Soltis, PS Soltis - Nature Plants, 2019 - nature.com
Magnoliid genomes provide novel insight into early angiosperm evolution, showing how
whole-genome duplication and proliferation of transposable elements have shaped these …

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone

J Leebens-Mack, LA Raubeson, L Cui… - Molecular Biology …, 2005 - academic.oup.com
While there has been strong support for Amborella and Nymphaeales (water lilies) as
branching from basal-most nodes in the angiosperm phylogeny, this hypothesis has recently …