Genome-Wide Computational Prediction and Analysis of Noncoding RNAs in Oleidesulfovibrio alaskensis G20

RN Singh, RK Sani - Microorganisms, 2024 - mdpi.com
Noncoding RNAs (ncRNAs) play key roles in the regulation of important pathways, including
cellular growth, stress management, signaling, and biofilm formation. Sulfate-reducing …

Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20

RN Singh, EZ Gnimpieba… - 2023 IEEE International …, 2023 - ieeexplore.ieee.org
Biofilm, is a special-complex organization of bacterial cells with multiple layers, formed in
certain environmental conditions. In the complex biofilm different bacterial cells perform …

Transcriptome-wide marker gene expression analysis of stress-responsive sulfate-reducing bacteria

K Jawaharraj, V Peta, SS Dhiman, EZ Gnimpieba… - Scientific Reports, 2023 - nature.com
Sulfate-reducing bacteria (SRB) are terminal members of any anaerobic food chain. For
example, they critically influence the biogeochemical cycling of carbon, nitrogen, sulfur, and …

Integration of text mining and biological network analysis: Identification of essential genes in sulfate-reducing bacteria

P Saxena, S Rauniyar, P Thakur, RN Singh… - Frontiers in …, 2023 - frontiersin.org
The growth and survival of an organism in a particular environment is highly depends on the
certain indispensable genes, termed as essential genes. Sulfate-reducing bacteria (SRB) …

[PDF][PDF] Computational Identification of Small RNAs in Clostridium acetobutylicum and Prediction of mRNA Targets

Y Chen, D Indurthi, S Jones, ET Papoutsakis - Online] Nov, 2008 - folk.ntnu.no
Small non-coding bacterial RNAs (sRNAs) have been found in genomes of many model
organisms. Many studies show that sRNAs play important regulatory roles in a variety of …

Identification of a Novel Small RNA srvg23535 in Vibrio alginolyticus ZJ-T and Its Characterization With Phenotype MicroArray Technology

Y Deng, Y Su, S Liu, Z Guo, C Cheng, H Ma… - Frontiers in …, 2018 - frontiersin.org
Small non-coding RNAs (sRNAs) are important modulators of gene expression and are
involved in the pathogenesis and survival of prokaryotes. However, few studies have been …

Text-mining to identify gene sets involved in biocorrosion by sulfate-reducing bacteria: A Semi-Automated Workflow

P Thakur, MO Alaba, S Rauniyar, RN Singh, P Saxena… - Microorganisms, 2023 - mdpi.com
A significant amount of literature is available on biocorrosion, which makes manual
extraction of crucial information such as genes and proteins a laborious task. Despite the …

An improved method for identification of small non-coding RNAs in bacteria using support vector machine

RK Barman, A Mukhopadhyay, S Das - Scientific reports, 2017 - nature.com
Bacterial small non-coding RNAs (sRNAs) are not translated into proteins, but act as
functional RNAs. They are involved in diverse biological processes like virulence, stress …

[HTML][HTML] Identification of novel sRNAs involved in biofilm formation, motility and fimbriae formation in Escherichia coli

G Bak, J Lee, S Suk, D Kim, J Young Lee, K Kim… - Scientific reports, 2015 - nature.com
Bacterial small RNAs (sRNAs) are known regulators in many physiological processes. In
Escherichia coli, a large number of sRNAs have been predicted, among which only about a …

High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs

J Livny, H Teonadi, M Livny, MK Waldor - PloS one, 2008 - journals.plos.org
Background Diverse bacterial genomes encode numerous small non-coding RNAs (sRNAs)
that regulate myriad biological processes. While bioinformatic algorithms have proven …