Geographical prevalence of SARS-CoV-2 variants, August 2020 to July 2021

WS Chan, YM Lam, JHY Law, TL Chan, ESK Ma… - Scientific Reports, 2022 - nature.com
We extracted one-year genomic data (August 2020–July 2021) from GISAID EpiCoV™
database and estimated monthly proportions of 11 SARS-CoV-2 variants in various …

Tracking SARS-CoV-2 variants through pandemic waves using RT-PCR testing in low-resource settings

A Nasir, UB Aamir, A Kanji, AR Bukhari… - PLOS global public …, 2023 - journals.plos.org
COVID-19 resulted in extensive morbidity and mortality worldwide. SARS-CoV-2 evolved
rapidly, with increasing transmission due to Variants of Concern (VOC). Identifying VOC …

Genomic Surveillance of SARS-CoV-2 in Healthcare Workers: A Critical Sentinel Group for Monitoring the SARS-CoV-2 Variant Shift

DA Padilha, DSM Souza, EK Kawagoe, VB Filho… - Viruses, 2023 - mdpi.com
SARS-CoV-2 genome surveillance is important for monitoring risk groups and health
workers as well as data on new cases and mortality rate due to COVID-19. We characterized …

Dynamics of SARS-CoV-2 variants of concern in Brazil, early 2021

JE Levi, CM Oliveira, BD Croce, P Telles… - Frontiers in Public …, 2021 - frontiersin.org
Brazil is the country with the second-largest number of deaths due to the coronavirus
disease-2019 (COVID-19). Two variants of concern (VOCs), Alpha (B. 1.1. 7) and Gamma …

Global distribution, dispersal patterns, and trend of several Omicron subvariants of SARS-CoV-2 across the globe

I Kopsidas, S Karagiannidou, EG Kostaki… - Tropical Medicine and …, 2022 - mdpi.com
Simple Summary SARS-CoV-2 is characterized by extensive genetic divergence. The
emergence of the variant of concern (VOC) Omicron, due to its characteristics, has caused …

Dynamics of SARS-CoV-2 variants of concern in vaccination model city in the State of Sao Paulo, Brazil

SN Slavov, DGL de La-Roque, PNM da Costa… - Viruses, 2022 - mdpi.com
From a country with one of the highest SARS-CoV-2 morbidity and mortality rates, Brazil has
implemented one of the most successful vaccination programs. Brazil's first model city …

Epidemiological characteristics of Omicron and Delta SARS-CoV-2 variant infection in Santiago, Chile

A Mella-Torres, A Escobar, C Barrera-Avalos… - Frontiers in public …, 2022 - frontiersin.org
The variant of concern (VOC) SARS-CoV-2 Omicron (B. 1.1529) has been described as a
highly contagious variant but less virulent than the current variant being monitored (VBM) …

Genomic surveillance and serological profile of SARS-CoV-2 variants circulating in Macaé and nearby cities, southeastern Brazil

ACVF da Silva, CAO Silva, GF de Sousa… - Frontiers in …, 2024 - frontiersin.org
Introduction A characteristic of the COVID-19 pandemic has been the sequential emergence
and global dissemination of SARS-CoV-2 variants, noted for their enhanced transmission …

The circulation of Non-SARS-CoV-2 respiratory viruses and coinfections with SARS-CoV-2 during the surge of the Omicron variant

RE Eldesouki, K Uhteg, HH Mostafa - Journal of Clinical Virology, 2022 - Elsevier
Abstract Background In December 2021, the SARS-CoV-2 Omicron variant displaced the
Delta variant and caused an unprecedented spike in the numbers of COVID-19 cases. This …

Epidemiological and Genomic Analysis of Asymptomatic SARS-CoV-2 Infections during the Delta and Omicron Epidemic Waves in São Paulo City, Brazil

SN Slavov, ARJ Lima, G Ribeiro, LPO de Lima… - Viruses, 2023 - mdpi.com
We examined the asymptomatic rates of SARS-CoV-2 infection during the Delta and
Omicron waves in the city of São Paulo. Nasopharyngeal swabs were collected at strategic …