Alu repeat discovery and characterization within human genomes
Human genomes are now being rapidly sequenced, but not all forms of genetic variation are
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …
routinely characterized. In this study, we focus on Alu retrotransposition events and seek to …
Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project
MK Konkel, JA Walker, AB Hotard… - Genome biology and …, 2015 - academic.oup.com
The goal of the 1000 Genomes Consortium is to characterize human genome structural
variation (SV), including forms of copy number variations such as deletions, duplications …
variation (SV), including forms of copy number variations such as deletions, duplications …
[HTML][HTML] In search of polymorphic Alu insertions with restricted geographic distributions
Alu elements are transposable elements that have reached over one million copies in the
human genome. Some Alu elements inserted in the genome so recently that they are still …
human genome. Some Alu elements inserted in the genome so recently that they are still …
Discovery and characterization of Alu repeat sequences via precise local read assembly
JH Wildschutte, A Baron, NM Diroff… - Nucleic acids …, 2015 - academic.oup.com
Alu insertions have contributed to> 11% of the human genome and∼ 30–35 Alu subfamilies
remain actively mobile, yet the characterization of polymorphic Alu insertions from short-read …
remain actively mobile, yet the characterization of polymorphic Alu insertions from short-read …
Recently integrated human Alu repeats: finding needles in the haystack
Alu elements undergo amplification through retroposition and integration into new locations
throughout primate genomes. Over 500,000 Alu elements reside in the human genome …
throughout primate genomes. Over 500,000 Alu elements reside in the human genome …
TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data
Alu retrotransposons account for more than 10% of the human genome, and insertions of
these elements create structural variants segregating in human populations. Such …
these elements create structural variants segregating in human populations. Such …
Estimating the retrotransposition rate of human Alu elements
Mobile elements such as Alu repeats have substantially altered the architecture of the
human genome, and de novo mobile element insertions sometimes cause genetic …
human genome, and de novo mobile element insertions sometimes cause genetic …
Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations
DJ Witherspoon, Y Zhang, J Xing, WS Watkins… - Genome …, 2013 - genome.cshlp.org
Alu retrotransposons are the most numerous and active mobile elements in humans,
causing genetic disease and creating genomic diversity. Mobile element scanning (ME …
causing genetic disease and creating genomic diversity. Mobile element scanning (ME …
[HTML][HTML] Alu repeats increase local recombination rates
DJ Witherspoon, WS Watkins, Y Zhang, J Xing… - BMC genomics, 2009 - Springer
Background Recombination rates vary widely across the human genome, but little of that
variation is correlated with known DNA sequence features. The genome contains more than …
variation is correlated with known DNA sequence features. The genome contains more than …
Whole-genome analysis of Alu repeat elements reveals complex evolutionary history
AL Price, E Eskin, PA Pevzner - Genome research, 2004 - genome.cshlp.org
Alu repeats are the most abundant family of repeats in the human genome, with over 1
million copies comprising 10% of the genome. They have been implicated in human genetic …
million copies comprising 10% of the genome. They have been implicated in human genetic …