Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution
Chloroplast sequence data are widely used to infer phylogenies of plants and algae. With
the increasing availability of complete chloroplast genome sequences, the opportunity …
the increasing availability of complete chloroplast genome sequences, the opportunity …
[HTML][HTML] Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny
Q Liu, X Li, M Li, W Xu, T Schwarzacher… - BMC plant biology, 2020 - Springer
Abstract Background Oat (Avena sativa L.) is a recognized health-food, and the contributions
of its different candidate A-genome progenitor species remain inconclusive. Here, we report …
of its different candidate A-genome progenitor species remain inconclusive. Here, we report …
[HTML][HTML] Comparative Chloroplast Genomes of Camellia Species
JB Yang, SX Yang, HT Li, J Yang, DZ Li - PLoS One, 2013 - journals.plos.org
Background Camellia, comprising more than 200 species, is a valuable economic
commodity due to its enormously popular commercial products: tea leaves, flowers, and high …
commodity due to its enormously popular commercial products: tea leaves, flowers, and high …
[HTML][HTML] Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis
We investigated the complete chloroplast (cp) genomes of non-model Arabidopsis halleri
ssp. gemmifera and Arabidopsis lyrata ssp. petraea using Illumina paired-end sequencing to …
ssp. gemmifera and Arabidopsis lyrata ssp. petraea using Illumina paired-end sequencing to …
Analysis of Acorus calamus Chloroplast Genome and Its Phylogenetic Implications
VV Goremykin, B Holland… - Molecular biology …, 2005 - academic.oup.com
Determining the phylogenetic relationships among the major lines of angiosperms is a long-
standing problem, yet the uncertainty as to the phylogenetic affinity of these lines persists …
standing problem, yet the uncertainty as to the phylogenetic affinity of these lines persists …
[HTML][HTML] The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in …
LA Cauz-Santos, CF Munhoz, N Rodde… - Frontiers in Plant …, 2017 - frontiersin.org
The family Passifloraceae consists of some 700 species classified in around 16 genera.
Almost all its members belong to the genus Passiflora. In Brazil, the yellow passion fruit …
Almost all its members belong to the genus Passiflora. In Brazil, the yellow passion fruit …
[HTML][HTML] Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq
Chloroplast genomes (cp genomes) are widely used in comparative genomics, population
genetics, and phylogenetic studies. Obtaining chloroplast genomes from RNA-Seq data …
genetics, and phylogenetic studies. Obtaining chloroplast genomes from RNA-Seq data …
Complete chloroplast genome sequence of pineapple (Ananas comosus)
K Nashima, S Terakami, C Nishitani, M Kunihisa… - Tree Genetics & …, 2015 - Springer
Since chloroplasts are maternally inherited and have unique features in evolution, their
genome sequences have been broadly used in phylogenetic studies of plants. Here, we …
genome sequences have been broadly used in phylogenetic studies of plants. Here, we …
[HTML][HTML] CGAP: a new comprehensive platform for the comparative analysis of chloroplast genomes
J Cheng, X Zeng, G Ren, Z Liu - BMC bioinformatics, 2013 - Springer
Background Chloroplast is an essential organelle in plants which contains independent
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …
[HTML][HTML] Thirteen Camelliachloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships
Background Camellia is an economically and phylogenetically important genus in the family
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …
Theaceae. Owing to numerous hybridization and polyploidization, it is taxonomically and …