Chloroplast phylogenomics resolves key relationships in ferns

JM Lu, N Zhang, XY Du, J Wen… - Journal of Systematics …, 2015 - Wiley Online Library
Studies on chloroplast genomes of ferns and lycophytes are relatively few in comparison
with those on seed plants. Although a basic phylogenetic framework of extant ferns is …

Comparative Analysis of the Complete Chloroplast Genomes of Four Chestnut Species (Castanea)

H Zhou, X Gao, K Woeste, P Zhao, S Zhang - Forests, 2021 - mdpi.com
Chloroplast (cp) DNA genomes are traditional workhorses for studying the evolution of
species and reconstructing phylogenetic relationships in plants. Species of the genus …

Assembly, annotation and analysis of chloroplast genomes

X Zhong - 2020 - research-repository.uwa.edu.au
Chloroplast genome data is useful for phylogenetic analyses, for species identification and
for tracing evolutionary adaptations. Current sequencing technology enables us to obtain …

Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding

B Kersten, P Faivre Rampant, M Mader… - PLoS …, 2016 - journals.plos.org
Complete Populus genome sequences are available for the nucleus (P. trichocarpa; section
Tacamahaca) and for chloroplasts (seven species), but not for mitochondria. Here, we …

Molecular evolution and SSRs analysis based on the chloroplast genome of Callitropsis funebris

J Ping, P Feng, J Li, R Zhang, Y Su… - Ecology and …, 2021 - Wiley Online Library
Chloroplast genome sequences have been used to understand evolutionary events and to
infer efficiently phylogenetic relationships. Callitropsis funebris (Cupressaceae) is an …

Comparative Analyses of Euonymus Chloroplast Genomes: Genetic Structure, Screening for Loci With Suitable Polymorphism, Positive Selection Genes, and …

Y Li, Y Dong, Y Liu, X Yu, M Yang… - Frontiers in Plant Science, 2021 - frontiersin.org
In this study, we assembled and annotated the chloroplast (cp) genome of the Euonymus
species Euonymus fortunei, Euonymus phellomanus, and Euonymus maackii, and …

[PDF][PDF] The new completed genome of purple willow (Salix purpurea) and conserved chloroplast genome structure of Salicaceae

Z Wu - J. Nat. Sci, 2015 - academia.edu
To compare the whole chloroplast genomes from Salicaceae, the fully assembled
chloroplast genome purple willow (Salix purpurea) was assembled in this study based on …

The Complete Chloroplast Genome of Endangered Species Stemona parviflora: Insight into the Phylogenetic Relationship and Conservation Implications

R Wei, Q Li - Genes, 2022 - mdpi.com
Stemona parviflora is an endangered species, narrowly endemic to Hainan and Southwest
Guangdong. The taxonomic classification of S. parviflora remains controversial. Moreover …

CPGView: A package for visualizing detailed chloroplast genome structures

S Liu, Y Ni, J Li, X Zhang, H Yang… - Molecular ecology …, 2023 - Wiley Online Library
Chloroplast genomes have been widely used in studying plant phylogeny and evolution.
Several chloroplast genome visualization tools have been developed to display the …

Species Delimitation and Interspecific Relationships of the Genus Orychophragmus (Brassicaceae) Inferred from Whole Chloroplast Genomes

H Hu, Q Hu, IA Al-Shehbaz, X Luo, T Zeng… - Frontiers in Plant …, 2016 - frontiersin.org
Genetic variations from few chloroplast DNA fragments show lower discriminatory power in
the delimitation of closely related species and less resolution ability in discerning …