[HTML][HTML] Deciphering conformational selectivity in the A2A adenosine G protein-coupled receptor by free energy simulations
W Jespers, LH Heitman, AP IJzerman… - PLOS Computational …, 2021 - journals.plos.org
Transmembranal G Protein-Coupled Receptors (GPCRs) transduce extracellular chemical
signals to the cell, via conformational change from a resting (inactive) to an active …
signals to the cell, via conformational change from a resting (inactive) to an active …
[HTML][HTML] Insights into adenosine A2A receptor activation through cooperative modulation of agonist and allosteric lipid interactions
A Bruzzese, JAR Dalton, J Giraldo - PLoS computational biology, 2020 - journals.plos.org
The activation process of G protein-coupled receptors (GPCRs) has been extensively
studied, both experimentally and computationally. In particular, Molecular Dynamics (MD) …
studied, both experimentally and computationally. In particular, Molecular Dynamics (MD) …
Importance of protein dynamics in the structure-based drug discovery of class AG protein-coupled receptors (GPCRs)
Highlights•GPCRs, a superfamily of membrane proteins, are vital for multiple signaling
pathways related to human physiology.•GPCR activation induces conformational changes …
pathways related to human physiology.•GPCR activation induces conformational changes …
Mapping the druggable allosteric space of G‐protein coupled receptors: a fragment‐based molecular dynamics approach
A Ivetac, J Andrew McCammon - Chemical biology & drug …, 2010 - Wiley Online Library
To address the problem of specificity in G‐protein coupled receptor (GPCR) drug discovery,
there has been tremendous recent interest in allosteric drugs that bind at sites …
there has been tremendous recent interest in allosteric drugs that bind at sites …
[HTML][HTML] AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility
Automated docking of drug-like molecules into receptors is an essential tool in structure-
based drug design. While modeling receptor flexibility is important for correctly predicting …
based drug design. While modeling receptor flexibility is important for correctly predicting …
Higher accuracy achieved for protein–ligand binding pose prediction by elastic network model-based ensemble docking
A Wang, Y Zhang, H Chu, C Liao… - Journal of Chemical …, 2020 - ACS Publications
Molecular docking plays an indispensable role in predicting the receptor–ligand interactions
in which the protein receptor is usually kept rigid, whereas the ligand is treated as being …
in which the protein receptor is usually kept rigid, whereas the ligand is treated as being …
G protein-coupled receptors as challenging druggable targets: insights from in silico studies
S Moro, M Bacilieri, F Deflorian, G Spalluto - New Journal of Chemistry, 2006 - pubs.rsc.org
The successful identification of hundreds of G protein-coupled receptors (GPCRs)
represents the single greatest opportunity for novel drug development today. The crystal …
represents the single greatest opportunity for novel drug development today. The crystal …
Incorporating backbone flexibility in MedusaDock improves ligand-binding pose prediction in the CSAR2011 docking benchmark
F Ding, NV Dokholyan - Journal of chemical information and …, 2013 - ACS Publications
Solution of the structures of ligand–receptor complexes via computational docking is an
integral step in many structural modeling efforts as well as in rational drug discovery. A …
integral step in many structural modeling efforts as well as in rational drug discovery. A …
SanDReS: A computational tool for docking
G Bitencourt-Ferreira, WF de Azevedo - Docking Screens for Drug …, 2019 - Springer
Since the early 1980s, we have witnessed considerable progress in the development and
application of docking programs to assess protein–ligand interactions. Most of these …
application of docking programs to assess protein–ligand interactions. Most of these …
Bridging Molecular Docking to Membrane Molecular Dynamics To Investigate GPCR–Ligand Recognition: The Human A2A Adenosine Receptor as a Key Study
G protein-coupled receptors (GPCRs) represent the largest family of cell-surface receptors
and about one-third of the actual targets of clinically used drugs. Following the progress …
and about one-third of the actual targets of clinically used drugs. Following the progress …