Local water bridges and protein conformational stability
M Petukhov, D Cregut, CM Soares, L Serrano - Protein Science, 1999 - cambridge.org
Recent studies have pointed out the important role of local water structures in protein
conformational stability. Here, we present an accurate and computationally effective way to …
conformational stability. Here, we present an accurate and computationally effective way to …
Buried water molecules contribute to the conformational stability of a protein
K Takano, Y Yamagata, K Yutani - Protein engineering, 2003 - academic.oup.com
This study sought to attain a better understanding of the contribution of buried water
molecules to protein stability. The 3SS human lysozyme lacks one disulfide bond between …
molecules to protein stability. The 3SS human lysozyme lacks one disulfide bond between …
Thermodynamic analysis of water molecules at the surface of proteins and applications to binding site prediction and characterization
Water plays an essential role in determining the structure and function of all biological
systems. Recent methodological advances allow for an accurate and efficient estimation of …
systems. Recent methodological advances allow for an accurate and efficient estimation of …
Water and proteins: A love–hate relationship
Y Levy, JN Onuchic - … of the National Academy of Sciences, 2004 - National Acad Sciences
It is widely appreciated that water molecules play an invaluable role in governing the
structure, stability, dynamics, and function of biomolecules. The hydration forces are …
structure, stability, dynamics, and function of biomolecules. The hydration forces are …
Structure of hydration water in proteins: a comparison of molecular dynamics simulations and database analysis
N Bhattacharjee, P Biswas - Biophysical Chemistry, 2011 - Elsevier
Hydration layer water molecules play important structural and functional roles in proteins.
Despite being a critical component in biomolecular systems, characterizing the properties of …
Despite being a critical component in biomolecular systems, characterizing the properties of …
How the stability of a folded protein depends on interfacial water properties and residue-residue interactions
Proteins tend to adopt a single or a reduced ensemble of configurations at natural conditions
[1], but changes in temperature T and pressure P induce their unfolding. Therefore for each …
[1], but changes in temperature T and pressure P induce their unfolding. Therefore for each …
Water‐mediated interactions destabilize proteins
T Sumi, H Imamura - Protein Science, 2021 - Wiley Online Library
Proteins are folded to avoid exposure of the nonpolar groups to water because water‐
mediated interactions between nonpolar groups are a promising factor in the …
mediated interactions between nonpolar groups are a promising factor in the …
Statistical and molecular dynamics studies of buried waters in globular proteins
Buried solvent molecules are common in the core of globular proteins and contribute to
structural stability. Folding necessitates the burial of polar backbone atoms in the protein …
structural stability. Folding necessitates the burial of polar backbone atoms in the protein …
A “solvated rotamer” approach to modeling water‐mediated hydrogen bonds at protein–protein interfaces
Water‐mediated hydrogen bonds play critical roles at protein–protein and protein–nucleic
acid interfaces, and the interactions formed by discrete water molecules cannot be captured …
acid interfaces, and the interactions formed by discrete water molecules cannot be captured …
Total free energy analysis of fully hydrated proteins
J Kalayan, A Chakravorty, J Warwicker… - Proteins: Structure …, 2023 - Wiley Online Library
The total free energy of a hydrated biomolecule and its corresponding decomposition of
energy and entropy provides detailed information about regions of thermodynamic stability …
energy and entropy provides detailed information about regions of thermodynamic stability …