Analysis of Pseudomonas putida growth on non‐trivial carbon sources using transcriptomics and genome‐scale modelling
I D'Arrigo, JGR Cardoso, M Rennig… - Environmental …, 2019 - Wiley Online Library
Pseudomonas putida is characterized by a versatile metabolism and stress tolerance traits
that allow the bacterium to cope with different environmental conditions. In this work, the …
that allow the bacterium to cope with different environmental conditions. In this work, the …
High‐quality genome‐scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities
Genome‐scale reconstructions of metabolism are computational species‐specific
knowledge bases able to compute systemic metabolic properties. We present a …
knowledge bases able to compute systemic metabolic properties. We present a …
Identification of conditionally essential genes for growth of Pseudomonas putida KT2440 on minimal medium through the screening of a genome‐wide mutant library
MA Molina‐Henares, J De La Torre… - Environmental …, 2010 - Wiley Online Library
In silico models for Pseudomonas putida KT2440 metabolism predict 68 genes to be
essential for growth on minimal medium. In this study a genome‐wide collection of single …
essential for growth on minimal medium. In this study a genome‐wide collection of single …
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho… - PLoS computational …, 2008 - journals.plos.org
A cornerstone of biotechnology is the use of microorganisms for the efficient production of
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …
chemicals and the elimination of harmful waste. Pseudomonas putida is an archetype of …
Gross transcriptomic analysis of Pseudomonas putida for diagnosing environmental shifts
The biological regime of Pseudomonas putida (and any other bacterium) under given
environmental conditions results from the hierarchical expression of sets of genes that …
environmental conditions results from the hierarchical expression of sets of genes that …
In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions
Background Pseudomonas putida is a metabolically versatile, genetically accessible, and
stress-robust species with outstanding potential to be used as a workhorse for industrial …
stress-robust species with outstanding potential to be used as a workhorse for industrial …
A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration
LFC Kampers, JJ Koehorst, RJA van Heck… - BMC microbiology, 2021 - Springer
Background Pseudomonas putida KT2440 is a metabolically versatile, HV1-certified,
genetically accessible, and thus interesting microbial chassis for biotechnological …
genetically accessible, and thus interesting microbial chassis for biotechnological …
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory
Background Pseudomonas putida is the best studied pollutant degradative bacteria and is
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …
harnessed by industrial biotechnology to synthesize fine chemicals. Since the publication of …
Core and auxiliary functions of one-carbon metabolism in Pseudomonas putida exposed by a systems-level analysis of transcriptional and physiological responses
The soil bacterium Pseudomonas putida is a robust biomanufacturing host that assimilates a
broad range of substrates while efficiently coping with adverse environmental conditions. P …
broad range of substrates while efficiently coping with adverse environmental conditions. P …
Multi-omics analysis unravels a segregated metabolic flux network that tunes co-utilization of sugar and aromatic carbons in Pseudomonas putida
Pseudomonas species thrive in different nutritional environments and can catabolize
divergent carbon substrates. These capabilities have important implications for the role of …
divergent carbon substrates. These capabilities have important implications for the role of …