SARS-CoV-2 within-host diversity and transmission

KA Lythgoe, M Hall, L Ferretti, M de Cesare… - Science, 2021 - science.org
INTRODUCTION Genome sequencing at an unprecedented scale during the severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic is helping to track spread of …

[HTML][HTML] Comparison of SARS-CoV-2 whole genome sequencing using tiled amplicon enrichment and bait hybridization

A Koskela von Sydow, CM Lindqvist, N Asghar… - Scientific Reports, 2023 - nature.com
The severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) pandemic has led to
extensive virological monitoring by whole genome sequencing (WGS). Investigating the …

Catching SARS-CoV-2 by sequence hybridization: a comparative analysis

A Rehn, P Braun, M Knüpfer, R Wölfel, MH Antwerpen… - …, 2021 - Am Soc Microbiol
Controlling and monitoring the still ongoing severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2) pandemic regarding geographical distribution, evolution, and emergence …

Fitness, growth and transmissibility of SARS-CoV-2 genetic variants

E Volz - Nature Reviews Genetics, 2023 - nature.com
The massive scale of the global SARS-CoV-2 sequencing effort created new opportunities
and challenges for understanding SARS-CoV-2 evolution. Rapid detection and assessment …

[HTML][HTML] Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies

BT Lau, D Pavlichin, AC Hooker, A Almeda, G Shin… - Genome medicine, 2021 - Springer
Background The genome of SARS-CoV-2 is susceptible to mutations during viral replication
due to the errors generated by RNA-dependent RNA polymerases. These mutations enable …

[HTML][HTML] Genomic analysis and comparative multiple sequences of SARS-CoV2

TJ Chang, DM Yang, ML Wang, KH Liang… - Journal of the …, 2020 - journals.lww.com
Background: China announced an outbreak of new coronavirus in the city of Wuhan on
December 31, 2019; lash to now, the virus transmission has become pandemic worldwide …

[HTML][HTML] The lag in SARS-CoV-2 genome submissions to GISAID

K Kalia, G Saberwal, G Sharma - Nature Biotechnology, 2021 - nature.com
To the Editor—Genomic surveillance of the evolving SARS-CoV-2 strains is an important
tool for helping control the pandemic1. For efficient surveillance, the first major requirement …

Comparative analyses of SAR-CoV2 genomes from different geographical locations and other coronavirus family genomes reveals unique features potentially …

R Sardar, D Satish, S Birla, D Gupta - BioRxiv, 2020 - biorxiv.org
The ongoing pandemic of the coronavirus disease 2019 (COVID-19) is an infectious disease
caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV2). We have …

[HTML][HTML] First Nations Health: The need for linked genomic surveillance of SARS-CoV-2

C Colijn, DJD Earn, J Dushoff, NH Ogden… - Canada …, 2022 - ncbi.nlm.nih.gov
Genomic surveillance during the coronavirus disease 2019 (COVID-19) pandemic has been
key to the timely identification of virus variants with important public health consequences …

[HTML][HTML] Characterizing SARS-CoV-2 genome diversity circulating in South American countries: Signatures of potentially emergent lineages?

M Muñoz, LH Patiño, N Ballesteros… - International Journal of …, 2021 - Elsevier
Objectives To evaluate the genomic diversity and geographic distribution of SARS-CoV-2
lineages in South America. Methods SARS-CoV-2 lineages from a public dataset of 5583 …