A novel method for detecting uniparental disomy from trio genotypes identifies a significant excess in children with developmental disorders

DA King, TW Fitzgerald, R Miller, N Canham… - Genome …, 2014 - genome.cshlp.org
Exome sequencing of parent-offspring trios is a popular strategy for identifying causative
genetic variants in children with rare diseases. This method owes its strength to the …

Uniparental disomy in a population of 32,067 clinical exome trios

J Scuffins, J Keller-Ramey, L Dyer, G Douglas… - Genetics in …, 2021 - nature.com
Purpose Data on the clinical prevalence and spectrum of uniparental disomy (UPD) remain
limited. Trio exome sequencing (ES) presents a comprehensive method for detection of UPD …

Whole exome sequencing in a patient with uniparental disomy of chromosome 2 and a complex phenotype

H Carmichael, Y Shen, TT Nguyen… - Clinical …, 2013 - Wiley Online Library
Whole exome sequencing and chromosomal microarrays are two powerful technologies that
have transformed the ability of researchers to search for potentially causal variants in human …

UPDtool: a tool for detection of iso-and heterodisomy in parent–child trios using SNP microarrays

C Schroeder, M Sturm, A Dufke… - …, 2013 - academic.oup.com
UPDtool is a computational tool for detection and classification of uniparental disomy (UPD)
in trio SNP-microarray experiments. UPDs are rare events of chromosomal malsegregation …

[HTML][HTML] Accurate detection of clinically relevant uniparental disomy from exome sequencing data

K Yauy, N de Leeuw, HG Yntema, R Pfundt… - Genetics in Medicine, 2020 - Elsevier
Purpose Uniparental disomy (UPD) is the rare occurrence of two homologous chromosomes
originating from the same parent and is typically identified by marker analysis or single …

Uniparental disomy analysis in trios using genome-wide SNP array and whole-genome sequencing data imply segmental uniparental isodisomy in general …

K Sasaki, H Mishima, K Miura, K Yoshiura - Gene, 2013 - Elsevier
Whole chromosomal and segmental uniparental disomy (UPD) is one of the causes of
imprinting disorder and other recessive disorders. Most investigations of UPD were …

[HTML][HTML] Analysis workflow to assess de novo genetic variants from human whole-exome sequencing

NS Diab, S King, W Dong, G Allington, A Sheth… - STAR protocols, 2021 - Elsevier
Here, we present a protocol to analyze de novo genetic variants derived from the whole-
exome sequencing (WES) of proband-parent trios. We provide stepwise instructions for …

[HTML][HTML] Interpretation and reporting of large regions of homozygosity and suspected consanguinity/uniparental disomy, 2021 revision: A technical standard of the …

PR Gonzales, EF Andersen, TR Brown, VL Horner… - Genetics in …, 2022 - Elsevier
Genomic testing, including single-nucleotide variation (formerly single-nucleotide
polymorphism)–based chromosomal microarray and exome and genome sequencing, can …

Discovery of four recessive developmental disorders using probabilistic genotype and phenotype matching among 4,125 families

N Akawi, J McRae, M Ansari, M Balasubramanian… - Nature …, 2015 - nature.com
Discovery of most autosomal recessive disease-associated genes has involved analysis of
large, often consanguineous multiplex families or small cohorts of unrelated individuals with …

Characterization of prevalence and health consequences of uniparental disomy in four million individuals from the general population

P Nakka, SP Smith, AH O'Donnell-Luria… - The American Journal of …, 2019 - cell.com
Meiotic nondisjunction and resulting aneuploidy can lead to severe health consequences in
humans. Aneuploidy rescue can restore euploidy but may result in uniparental disomy …