Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains

M Llinas, Z Bozdech, ED Wong, AT Adai… - Nucleic acids …, 2006 - academic.oup.com
Gene expression patterns have been demonstrated to be highly variable between similar
cell types, for example lab strains and wild strains of Saccharomyces cerevisiae cultured …

[HTML][HTML] Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres

TD Otto, U Böhme, M Sanders, A Reid… - Wellcome open …, 2018 - ncbi.nlm.nih.gov
Background: Although thousands of clinical isolates of Plasmodium falciparum are being
sequenced and analysed by short read technology, the data do not resolve the highly …

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data

A Bahl, B Brunk, J Crabtree, MJ Fraunholz… - Nucleic acids …, 2003 - academic.oup.com
Abstract PlasmoDB (http://PlasmoDB. org) is the official database of the Plasmodium
falciparum genome sequencing consortium. This resource incorporates the recently …

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both …

A Bahl, B Brunk, RL Coppel, J Crabtree… - Nucleic acids …, 2002 - academic.oup.com
Abstract PlasmoDB (http://PlasmoDB. org) is the official database of the Plasmodium
falciparum genome sequencing consortium. This resource incorporates finished and draft …

Identification of regulatory elements in the Plasmodium falciparum genome

KT Militello, M Dodge, L Bethke, DF Wirth - Molecular and Biochemical …, 2004 - Elsevier
There is little information regarding regulatory sequences in the newly sequenced genome
of the malaria parasite, Plasmodium falciparum. Thus, for the first time, a bioinformatic …

New insights into the blood‐stage transcriptome of Plasmodium falciparum using RNA‐Seq

TD Otto, D Wilinski, S Assefa, TM Keane… - Molecular …, 2010 - Wiley Online Library
Recent advances in high‐throughput sequencing present a new opportunity to deeply probe
an organism's transcriptome. In this study, we used Illumina‐based massively parallel …

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

RMR Coulson, N Hall, CA Ouzounis - Genome research, 2004 - genome.cshlp.org
The life cycle of the parasite Plasmodium falciparum, responsible for the most deadly form of
human malaria, requires specialized protein expression for survival in the mammalian host …

A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses

N Hall, M Karras, JD Raine, JM Carlton, TWA Kooij… - Science, 2005 - science.org
Plasmodium berghei and Plasmodium chabaudi are widely used model malaria species.
Comparison of their genomes, integrated with proteomic and microarray data, with the …

In Vivo Transcriptome of Plasmodium falciparum Reveals Overexpression of Transcripts That Encode Surface Proteins

JP Daily, KG Le Roch, O Sarr, D Ndiaye… - The Journal of …, 2005 - academic.oup.com
Infections with the human parasite Plasmodium falciparum continue to present a great
challenge to global health. Fundamental questions regarding the molecular basis of …

Genome wide gene amplifications and deletions in Plasmodium falciparum

U Ribacke, BW Mok, V Wirta, J Normark… - Molecular and …, 2007 - Elsevier
The extent to which duplications and deletions occur in the Plasmodium falciparum genome,
outside of the subtelomeres, and their contribution to the virulence of the malaria parasite is …