Reinterpretation of sequence variants: one diagnostic laboratory's experience, and the need for standard guidelines

C Chisholm, H Daoud, M Ghani, G Mettler… - Genetics in …, 2018 - nature.com
Purpose The advent of next-generation sequencing resulted in substantial increases in the
number of variants detected, interpreted, and reported by molecular genetics diagnostic …

Clinical interpretation of sequence variants

J Zhang, Y Yao, H He, J Shen - Current protocols in human …, 2020 - Wiley Online Library
Clinical interpretation of DNA sequence variants is a critical step in reporting clinical genetic
testing results. Application of next‐generation sequencing technology in molecular genetic …

[HTML][HTML] The challenge of comprehensive and consistent sequence variant interpretation between clinical laboratories

MG Pepin, ML Murray, S Bailey, D Leistritz-Kessler… - Genetics in …, 2016 - Elsevier
Purpose Genetic testing has shifted from academic laboratories with expertise in specific
genes to commercial laboratories that offer tests of a diverse array of genes. The purpose of …

ACMG recommendations for standards for interpretation and reporting of sequence variations: Revisions 2007

CS Richards, S Bale, DB Bellissimo, S Das… - Genetics in …, 2008 - nature.com
ACMG previously developed recommendations for standards for interpretation of sequence
variations. We now present the updated revised recommendations. Here, we describe six …

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics …

S Richards, N Aziz, S Bale, D Bick, S Das… - Genetics in …, 2015 - nature.com
Abstract Disclaimer: These ACMG Standards and Guidelines were developed primarily as
an educational resource for clinical laboratory geneticists to help them provide quality …

[HTML][HTML] Curating clinically relevant transcripts for the interpretation of sequence variants

MT DiStefano, SE Hemphill, BJ Cushman… - The Journal of Molecular …, 2018 - Elsevier
Variant interpretation depends on accurate annotations using biologically relevant
transcripts. We have developed a systematic strategy for designating primary transcripts and …

Communicating new knowledge on previously reported genetic variants

SJ Aronson, EH Clark, M Varugheese, S Baxter… - Genetics in …, 2012 - nature.com
Genetic tests often identify variants whose significance cannot be determined at the time
they are reported. In many situations, it is critical that clinicians be informed when new …

Challenges of variant reinterpretation: opinions of stakeholders and need for guidelines

SM Berger, PS Appelbaum, K Siegel, J Wynn… - Genetics in …, 2022 - Elsevier
Purpose The knowledge used to classify genetic variants is continually evolving, and the
classification can change on the basis of newly available data. Although up-to-date variant …

Standard mutation nomenclature in molecular diagnostics: practical and educational challenges

S Ogino, ML Gulley, JT den Dunnen, RB Wilson… - The Journal of molecular …, 2007 - Elsevier
To translate basic research findings into clinical practice, it is essential that information about
mutations and variations in the human genome are communicated easily and unequivocally …

[HTML][HTML] Challenges and considerations in sequence variant interpretation for mendelian disorders

YE Kim, CS Ki, MA Jang - Annals of Laboratory Medicine, 2019 - synapse.koreamed.org
Abstract In 2015, the American College of Medical Genetics and Genomics (ACMG),
together with the Association for Molecular Pathology (AMP), published the latest guidelines …