Genome‐wide identification and functional profile analysis of long non‐coding RNAs in Avicennia marina

L Wang, Z Yuan, J Wang, Y Guan - The Plant Genome, 2024 - Wiley Online Library
Avicennia marina, known for its remarkable adaptability to the challenging coastal
environment, including high salinity, tide, and anaerobic soils, holds pivotal functions in …

[HTML][HTML] Genome-wide identification, characterization, and functional analysis of lncRNAs in Hevea brasiliensis

L Wang, J Wang, H Chen, B Hu - Frontiers in Plant Science, 2022 - frontiersin.org
Natural rubber (NR) is an essential industrial raw material widely used in our life. Hevea
brasiliensis (Reyan7-33-97) is an economic plant producing natural rubber. Long non …

[HTML][HTML] Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant …

Y Zhu, L Chen, X Hong, H Shi, X Li - BMC genomics, 2022 - Springer
Background Previous studies on plant long noncoding RNAs (lncRNAs) lacked consistency
and suffered from many factors like heterogeneous data sources and experimental …

[HTML][HTML] Identification and analysis of short-term and long-term salt-associated lncRNAs in the leaf of Avicennia marina

L Wang, Y Fu, Z Yuan, J Wang, Y Guan - BMC Plant Biology, 2024 - Springer
As a highly salt-resistant mangrove, Avicennia marina can thrive in the hypersaline water.
The leaves of Avicennia marina play a crucial role in salinity stress adaptability by secreting …

[HTML][HTML] Data integration and evolutionary analysis of long non-coding RNAs in 25 flowering plants

S Sang, W Chen, D Zhang, X Zhang, W Yang, C Liu - BMC genomics, 2021 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) play vital roles in many important
biological processes in plants. Currently, a large fraction of plant lncRNA studies center at …

PLNlncRbase: A resource for experimentally identified lncRNAs in plants

H Xuan, L Zhang, X Liu, G Han, J Li, X Li, A Liu, M Liao… - Gene, 2015 - Elsevier
Accumulating published reports have confirmed the critical biological role (eg, cell
differentiation, gene regulation, stress response) for plant long non-coding RNAs (lncRNAs) …

[HTML][HTML] Genome-Wide Identification and Characterization of Long Non-Coding RNAs from Mulberry (Morus notabilis) RNA-seq Data

X Song, L Sun, H Luo, Q Ma, Y Zhao, D Pei - Genes, 2016 - mdpi.com
Numerous sources of evidence suggest that most of the eukaryotic genome is transcribed
into protein-coding mRNAs and also into a large number of non-coding RNAs (ncRNAs) …

[HTML][HTML] Genome-wide identification of long noncoding RNAs and their responses to salt stress in two closely related poplars

J Ma, X Bai, W Luo, Y Feng, X Shao, Q Bai, S Sun… - Frontiers in …, 2019 - frontiersin.org
Long noncoding RNAs (lncRNAs) are involved in various biological regulatory processes,
but their roles in plants resistance to salt stress remain largely unknown. To systematically …

[HTML][HTML] Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae

S Mohammadin, PP Edger, JC Pires, ME Schranz - BMC plant biology, 2015 - Springer
Abstract Background Long non-coding RNAs (LncRNAs) have been identified as gene
regulatory elements that influence the transcription of their neighbouring protein-coding …

Identification and allelic dissection uncover roles of lncRNAs in secondary growth of Populus tomentosa

D Zhou, Q Du, J Chen, Q Wang, D Zhang - DNA research, 2017 - academic.oup.com
Long non-coding RNAs (lncRNAs) function in various biological processes. However, their
roles in secondary growth of plants remain poorly understood. Here, 15,691 lncRNAs were …