From samples to insights into metabolism: Uncovering biologically relevant information in LC-HRMS metabolomics data

J Ivanisevic, EJ Want - Metabolites, 2019 - mdpi.com
Untargeted metabolomics (including lipidomics) is a holistic approach to biomarker
discovery and mechanistic insights into disease onset and progression, and response to …

Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis

A Rafiei, L Sleno - Rapid Communications in Mass …, 2015 - Wiley Online Library
RATIONALE Data analysis is a key step in mass spectrometry based untargeted
metabolomics, starting with the generation of generic peak lists from raw liquid …

Integrated, nontargeted ultrahigh performance liquid chromatography/electrospray ionization tandem mass spectrometry platform for the identification and relative …

AM Evans, CD DeHaven, T Barrett, M Mitchell… - Analytical …, 2009 - ACS Publications
To address the challenges associated with metabolomics analyses, such as identification of
chemical structures and elimination of experimental artifacts, we developed a platform that …

High-throughput metabolomics: isocratic and gradient mass spectrometry-based methods

T Nemkov, JA Reisz, S Gehrke, KC Hansen… - … : Methods and Protocols, 2019 - Springer
Metabolomics has emerged in the past decade as a highly attractive and impactful
technique for phenotype-level profiling in diverse biological applications. Most recently, the …

Expanding coverage of the metabolome for global metabolite profiling

O Yanes, R Tautenhahn, GJ Patti… - Analytical chemistry, 2011 - ACS Publications
Mass spectrometry-based metabolomics is the comprehensive study of naturally occurring
small molecules collectively known as the metabolome. Given the vast structural diversity …

XCMS Online: a web-based platform to process untargeted metabolomic data

R Tautenhahn, GJ Patti, D Rinehart… - Analytical …, 2012 - ACS Publications
Recently, interest in untargeted metabolomics has become prevalent in the general scientific
community among an increasing number of investigators. The majority of these …

High-throughput discovery metabolomics

T Fuhrer, N Zamboni - Current opinion in biotechnology, 2015 - Elsevier
Highlights•Chromatography-based mass spectrometry (MS) allows profiling 100 samples
per day.•Thousands of samples per day can be efficiently analyzed by omitting …

Challenges and emergent solutions for LC‐MS/MS based untargeted metabolomics in diseases

L Cui, H Lu, YH Lee - Mass spectrometry reviews, 2018 - Wiley Online Library
In the past decade, advances in liquid chromatography‐mass spectrometry (LC‐MS) have
revolutionized untargeted metabolomics analyses. By mining metabolomes more deeply …

HILIC‐MS for metabolomics: An attractive and complementary approach to RPLC‐MS

DQ Tang, L Zou, XX Yin, CN Ong - Mass spectrometry reviews, 2016 - Wiley Online Library
Hydrophilic interaction chromatography (HILIC) is an emerging separation mode of liquid
chromatography (LC). Using highly hydrophilic stationary phases capable of retaining …

Chemical isotope labeling LC-MS for high coverage and quantitative profiling of the hydroxyl submetabolome in metabolomics

S Zhao, X Luo, L Li - Analytical chemistry, 2016 - ACS Publications
A key step in metabolomics is to perform accurate relative quantification of the metabolomes
in comparative samples with high coverage. Hydroxyl-containing metabolites are an …