Identification and Functional Analysis of LncRNAs in Response to Seed Aging in Metasequoia glyptostroboides by Third Generation Sequencing Technology

Y Luo, J Le, Y Zhang, R Wang, Q Li, X Lu, J Liu, Z Deng - Forests, 2022 - mdpi.com
The seeds of Metasequia glyptostroboides Hu et Cheng, an endangered species, are
susceptible to aging, making natural population renewal difficult and increasing the risk of …

Identification of miRNAs associated with dark-induced senescence in Arabidopsis

X Huo, C Wang, Y Teng, X Liu - BMC Plant Biology, 2015 - Springer
Background microRNAs (miRNAs) are endogenous small (~ 21 nucleotide) single-stranded
non-coding RNAs that typically function by guiding cleavage of target genes. To find the …

Role of next-generation RNA-seq data in discovery and characterization of long non-coding RNA in plants

S Tyagi, A Sharma, SK Upadhyay - Next Generation Plant …, 2018 - books.google.com
The next-generation sequencing (NGS) technologies embrace advance sequencing
technologies that can generate high-throughput RNA-seq data to delve into all the possible …

Plant long noncoding RNAs: new players in the field of post-transcriptional regulations

C Fonouni-Farde, F Ariel, M Crespi - Non-coding RNA, 2021 - mdpi.com
The first reference to the “C-value paradox” reported an apparent imbalance between
organismal genome size and morphological complexity. Since then, next-generation …

Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq

J Chen, M Quan, D Zhang - Planta, 2015 - Springer
Increasing evidence shows that long non-coding RNAs (lncRNAs) function as important
regulatory factors during plant development, but few reports have examined lncRNAs in …

Long nonprotein-coding RNAs in plants

V Jouannet, M Crespi - Long Non-Coding RNAs, 2011 - Springer
In recent years, nonprotein-coding RNAs (or npcRNAs) have emerged as a major part of the
eukaryotic transcriptome. Many new regulatory npcRNAs or riboregulators have been …

Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element–like silencing

AE Kornienko, V Nizhynska, A Molla Morales… - The Plant …, 2024 - academic.oup.com
Long noncoding RNAs (lncRNAs) are understudied and underannotated in plants. In
mammals, lncRNA loci are nearly as ubiquitous as protein-coding genes, and their …

[HTML][HTML] Classification and experimental identification of plant long non-coding RNAs

MI Rai, M Alam, DA Lightfoot, P Gurha, AJ Afzal - Genomics, 2019 - Elsevier
Our understanding of gene regulation is constantly evolving. It is now clear that the majority
of cellular transcripts are non-coding RNAs. The spectrum of non-coding RNAs is diverse …

Regulatory long non-coding RNAs in root growth and development

T Roulé, M Crespi, T Blein - Biochemical Society Transactions, 2022 - portlandpress.com
As sessile organisms, plants have evolved sophisticated mechanisms of gene regulation to
cope with changing environments. Among them, long non-coding RNAs (lncRNAs) are a …

Functional classification of plant long noncoding RNAs: a transcript is known by the company it keeps

L Lucero, L Ferrero, C Fonouni‐Farde… - New Phytologist, 2021 - Wiley Online Library
The extraordinary maturation in high‐throughput sequencing technologies has revealed the
existence of a complex network of transcripts in eukaryotic organisms, including thousands …