NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
A key role in cell-mediated immunity is dedicated to the major histocompatibility complex
(MHC) molecules that bind peptides for presentation on the cell surface. Several in silico …
(MHC) molecules that bind peptides for presentation on the cell surface. Several in silico …
Ranking potential binding peptides to MHC molecules by a computational threading approach
Y Altuvia, O Schueler, H Margalit - Journal of molecular biology, 1995 - Elsevier
In this paper, an approach developed to address the inverse protein folding problem is
applied to prediction of potential binding peptides to a specific major histocompatibility …
applied to prediction of potential binding peptides to a specific major histocompatibility …
[HTML][HTML] NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets
M Nielsen, M Andreatta - Genome medicine, 2016 - Springer
Background Binding of peptides to MHC class I molecules (MHC-I) is essential for antigen
presentation to cytotoxic T-cells. Results Here, we demonstrate how a simple alignment step …
presentation to cytotoxic T-cells. Results Here, we demonstrate how a simple alignment step …
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
Several accurate prediction systems have been developed for prediction of class I major
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …
[HTML][HTML] MHCflurry: open-source class I MHC binding affinity prediction
TJ O'Donnell, A Rubinsteyn, M Bonsack, AB Riemer… - Cell systems, 2018 - cell.com
Predicting the binding affinity of major histocompatibility complex I (MHC I) proteins and their
peptide ligands is important for vaccine design. We introduce an open-source package for …
peptide ligands is important for vaccine design. We introduce an open-source package for …
Structure-based methods for binding mode and binding affinity prediction for peptide-MHC complexes
Understanding the mechanisms involved in the activation of an immune response is
essential to many fields in human health, including vaccine development and personalized …
essential to many fields in human health, including vaccine development and personalized …
MHCBN: a comprehensive database of MHC binding and non-binding peptides
MHCBN is a comprehensive database of Major Histocompatibility Complex (MHC) binding
and non-binding peptides compiled from published literature and existing databases. The …
and non-binding peptides compiled from published literature and existing databases. The …
ACME: pan-specific peptide–MHC class I binding prediction through attention-based deep neural networks
Motivation Prediction of peptide binding to the major histocompatibility complex (MHC) plays
a vital role in the development of therapeutic vaccines for the treatment of cancer. Algorithms …
a vital role in the development of therapeutic vaccines for the treatment of cancer. Algorithms …
DynaPred: a structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations
I Antes, SWI Siu, T Lengauer - Bioinformatics, 2006 - academic.oup.com
Motivation: The binding of endogenous antigenic peptides to MHC class I molecules is an
important step during the immunologic response of a host against a pathogen. Thus, various …
important step during the immunologic response of a host against a pathogen. Thus, various …
MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model
G Venkatesh, A Grover, G Srinivasaraghavan… - …, 2020 - academic.oup.com
Motivation Accurate prediction of binding between a major histocompatibility complex (MHC)
allele and a peptide plays a major role in the synthesis of personalized cancer vaccines. The …
allele and a peptide plays a major role in the synthesis of personalized cancer vaccines. The …