A cheminformatic toolkit for mining biomedical knowledge

GR Rosania, G Crippen, P Woolf, D States… - Pharmaceutical …, 2007 - Springer
Purpose Cheminformatics can be broadly defined to encompass any activity related to the
application of information technology to the study of properties, effects and uses of chemical …

PubTerm: a web tool for organizing, annotating and curating genes, diseases, molecules and other concepts from PubMed records

J Garcia-Pelaez, D Rodriguez, R Medina-Molina… - Database, 2019 - academic.oup.com
Background and objective Analysis, annotation and curation of biomedical scientific
literature is a recurrent task in biomedical research, database curation and clinics …

PubMed and beyond: a survey of web tools for searching biomedical literature

Z Lu - Database, 2011 - academic.oup.com
The past decade has witnessed the modern advances of high-throughput technology and
rapid growth of research capacity in producing large-scale biological data, both of which …

Exploiting PubChem for virtual screening

XQS Xie - Expert opinion on drug discovery, 2010 - Taylor & Francis
Importance of the field: PubChem is a public molecular information repository, a scientific
showcase of the National Institutes of Health Roadmap Initiative. The PubChem database …

A consensus compound/bioactivity dataset for data-driven drug design and chemogenomics

L Isigkeit, A Chaikuad, D Merk - Molecules, 2022 - mdpi.com
Publicly available compound and bioactivity databases provide an essential basis for data-
driven applications in life-science research and drug design. By analyzing several bioactivity …

PubChem in 2021: new data content and improved web interfaces

S Kim, J Chen, T Cheng, A Gindulyte, J He… - Nucleic acids …, 2021 - academic.oup.com
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a popular chemical information
resource that serves the scientific community as well as the general public, with millions of …

NLM-Chem, a new resource for chemical entity recognition in PubMed full text literature

R Islamaj, R Leaman, S Kim, D Kwon, CH Wei… - Scientific data, 2021 - nature.com
Automatically identifying chemical and drug names in scientific publications advances
information access for this important class of entities in a variety of biomedical disciplines by …

Getting the most out of PubChem for virtual screening

S Kim - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: With the emergence of the 'big data'era, the biomedical research community
has great interest in exploiting publicly available chemical information for drug discovery …

PubChem as a public resource for drug discovery

Q Li, T Cheng, Y Wang, SH Bryant - Drug discovery today, 2010 - Elsevier
PubChem is a public repository of small molecules and their biological properties. Currently,
it contains more than 25 million unique chemical structures and 90 million bioactivity …

Database resources of the national center for biotechnology information

EW Sayers, EE Bolton, JR Brister… - Nucleic acids …, 2022 - academic.oup.com
Abstract The National Center for Biotechnology Information (NCBI) produces a variety of
online information resources for biology, including the GenBank® nucleic acid sequence …