The cancer omics and drug experimental response dataset (CODERData): A harmonized benchmark dataset for machine learning models of drug response prediction
Background: Determining a patient's response to a specific therapy is a vital step in
developing personalized cancer treatment. Personalized treatment relies on two key …
developing personalized cancer treatment. Personalized treatment relies on two key …
CREAMMIST: an integrative probabilistic database for cancer drug response prediction
H Yingtaweesittikul, J Wu, A Mongia… - Nucleic Acids …, 2023 - academic.oup.com
Extensive in vitro cancer drug screening datasets have enabled scientists to identify
biomarkers and develop machine learning models for predicting drug sensitivity. While most …
biomarkers and develop machine learning models for predicting drug sensitivity. While most …
Systematic evaluation and comparison of drug response prediction models: a case study of prediction generalization across cell lines datasets
Predictive modeling holds great promise for improving personalized cancer treatment and
efficiency of drug development. In recent years, deep learning (DL) has been extensively …
efficiency of drug development. In recent years, deep learning (DL) has been extensively …
Computational identification of multi-omic correlates of anticancer therapeutic response
LC Stetson, T Pearl, Y Chen, JS Barnholtz-Sloan - BMC genomics, 2014 - Springer
Background A challenge in precision medicine is the transformation of genomic data into
knowledge that can be used to stratify patients into treatment groups based on predicted …
knowledge that can be used to stratify patients into treatment groups based on predicted …
Machine learning and feature selection for drug response prediction in precision oncology applications
M Ali, T Aittokallio - Biophysical reviews, 2019 - Springer
In-depth modeling of the complex interplay among multiple omics data measured from
cancer cell lines or patient tumors is providing new opportunities toward identification of …
cancer cell lines or patient tumors is providing new opportunities toward identification of …
Abstract P2-12-02: ClinicalomicsDB-Bridging the gap between clinical omics data and machine learning
CI Moon, B Jia, B Zhang - Cancer Research, 2023 - aacrjournals.org
BACKGROUND: Clinical trials are controlled patient studies aiming to objectively assess the
effectiveness of treatment interventions. However, the average effectiveness observed at the …
effectiveness of treatment interventions. However, the average effectiveness observed at the …
Bridging the gap between clinical-omics and machine learning to improve cancer treatment
CI Moon, B Jia, B Zhang - Cancer Research, 2023 - aacrjournals.org
Background: Few omics data-based prediction models have made a clinical impact due to
lack of access to real-world, clinically relevant datasets for method development and …
lack of access to real-world, clinically relevant datasets for method development and …
A survey and systematic assessment of computational methods for drug response prediction
J Chen, L Zhang - Briefings in bioinformatics, 2021 - academic.oup.com
Drug response prediction arises from both basic and clinical research of personalized
therapy, as well as drug discovery for cancers. With gene expression profiles and other …
therapy, as well as drug discovery for cancers. With gene expression profiles and other …
FORESEE: a tool for the systematic comparison of translational drug response modeling pipelines
LK Turnhoff, A Hadizadeh Esfahani, M Montazeri… - …, 2019 - academic.oup.com
Translational models that utilize omics data generated in in vitro studies to predict the drug
efficacy of anti-cancer compounds in patients are highly distinct, which complicates the …
efficacy of anti-cancer compounds in patients are highly distinct, which complicates the …
Dr. Paso: Drug response prediction and analysis system for oncology research
The prediction of anticancer drug response is crucial for achieving a more effective and
precise treatment of patients. Models based on the analysis of large cell line collections …
precise treatment of patients. Models based on the analysis of large cell line collections …
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