Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton
A Salmon, JA Udall, JA Jeddeloh… - G3: Genes| Genomes …, 2012 - academic.oup.com
Targeted sequence capture is a promising technology in many areas in biology. These
methods enable efficient and relatively inexpensive sequencing of hundreds to thousands of …
methods enable efficient and relatively inexpensive sequencing of hundreds to thousands of …
[HTML][HTML] Sampling nucleotide diversity in cotton
A Van Deynze, K Stoffel, M Lee, TA Wilkins, A Kozik… - BMC plant biology, 2009 - Springer
Background Cultivated cotton is an annual fiber crop derived mainly from two perennial
species, Gossypium hirsutum L. or upland cotton, and G. barbadense L., extra long-staple …
species, Gossypium hirsutum L. or upland cotton, and G. barbadense L., extra long-staple …
A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery
Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains
marker development and hampers intraspecific breeding. A pressing need exists for high …
marker development and hampers intraspecific breeding. A pressing need exists for high …
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome
Genetic linkage maps play fundamental roles in understanding genome structure,
explaining genome formation events during evolution, and discovering the genetic bases of …
explaining genome formation events during evolution, and discovering the genetic bases of …
[HTML][HTML] Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …
Unravelling gene expression of complex crop genomes
RJA Buggs - Heredity, 2013 - nature.com
Standing between us and global food shortage are high yielding varieties of wheat, oilseed
rape, potato, maize and sugarcane. These come from diverse plant families, but share the …
rape, potato, maize and sugarcane. These come from diverse plant families, but share the …
[HTML][HTML] Comparative analysis of genome sequences of the two cultivated tetraploid cottons, Gossypium hirsutum (L.) and G. barbadense (L.)
With innovations in sequencing technology and the progress of high-performance
computing systems, it is now relatively straightforward to sequence and assemble complex …
computing systems, it is now relatively straightforward to sequence and assemble complex …
[HTML][HTML] Sequencing multiple cotton genomes reveals complex structures and lays foundation for breeding
Y Pan, F Meng, X Wang - Frontiers in Plant Science, 2020 - frontiersin.org
Cotton is a major fiber plant, which provides raw materials for clothing, protecting humans
from the harsh environment of cold or hot weathers, enriching the culture and custom of …
from the harsh environment of cold or hot weathers, enriching the culture and custom of …
The rise of cotton genomics
Cotton is the most important fiber crop, but its polyploid genome is complex and difficult to
improve. Recent advances in obtaining high-quality genome sequences of cultivated …
improve. Recent advances in obtaining high-quality genome sequences of cultivated …
Detection, validation, and application of genotyping‐by‐sequencing based single nucleotide polymorphisms in upland cotton
MS Islam, GN Thyssen, JN Jenkins… - The Plant …, 2015 - Wiley Online Library
The presence of two closely related subgenomes in the allotetraploid Upland cotton,
combined with a narrow genetic base of the cultivated varieties, has hindered the …
combined with a narrow genetic base of the cultivated varieties, has hindered the …