Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton

A Salmon, JA Udall, JA Jeddeloh… - G3: Genes| Genomes …, 2012 - academic.oup.com
Targeted sequence capture is a promising technology in many areas in biology. These
methods enable efficient and relatively inexpensive sequencing of hundreds to thousands of …

[HTML][HTML] Sampling nucleotide diversity in cotton

A Van Deynze, K Stoffel, M Lee, TA Wilkins, A Kozik… - BMC plant biology, 2009 - Springer
Background Cultivated cotton is an annual fiber crop derived mainly from two perennial
species, Gossypium hirsutum L. or upland cotton, and G. barbadense L., extra long-staple …

A Long‐Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

H Ashrafi, AM Hulse‐Kemp, F Wang, SS Yang… - The plant …, 2015 - Wiley Online Library
Upland cotton (Gossypium hirsutum L.) has a narrow germplasm base, which constrains
marker development and hampers intraspecific breeding. A pressing need exists for high …

A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome

JZ Yu, RJ Kohel, DD Fang, J Cho… - G3: Genes …, 2012 - academic.oup.com
Genetic linkage maps play fundamental roles in understanding genome structure,
explaining genome formation events during evolution, and discovering the genetic bases of …

[HTML][HTML] Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

S Wang, J Chen, W Zhang, Y Hu, L Chang, L Fang… - Genome biology, 2015 - Springer
Background SNPs are the most abundant polymorphism type, and have been explored in
many crop genomic studies, including rice and maize. SNP discovery in allotetraploid cotton …

Unravelling gene expression of complex crop genomes

RJA Buggs - Heredity, 2013 - nature.com
Standing between us and global food shortage are high yielding varieties of wheat, oilseed
rape, potato, maize and sugarcane. These come from diverse plant families, but share the …

[HTML][HTML] Comparative analysis of genome sequences of the two cultivated tetraploid cottons, Gossypium hirsutum (L.) and G. barbadense (L.)

Q Meng, J Gu, Z Xu, J Zhang, J Tang, A Wang… - Industrial Crops and …, 2023 - Elsevier
With innovations in sequencing technology and the progress of high-performance
computing systems, it is now relatively straightforward to sequence and assemble complex …

[HTML][HTML] Sequencing multiple cotton genomes reveals complex structures and lays foundation for breeding

Y Pan, F Meng, X Wang - Frontiers in Plant Science, 2020 - frontiersin.org
Cotton is a major fiber plant, which provides raw materials for clothing, protecting humans
from the harsh environment of cold or hot weathers, enriching the culture and custom of …

The rise of cotton genomics

SSA Zaidi, S Mansoor, A Paterson - Trends in plant science, 2018 - cell.com
Cotton is the most important fiber crop, but its polyploid genome is complex and difficult to
improve. Recent advances in obtaining high-quality genome sequences of cultivated …

Detection, validation, and application of genotyping‐by‐sequencing based single nucleotide polymorphisms in upland cotton

MS Islam, GN Thyssen, JN Jenkins… - The Plant …, 2015 - Wiley Online Library
The presence of two closely related subgenomes in the allotetraploid Upland cotton,
combined with a narrow genetic base of the cultivated varieties, has hindered the …