Sensitivity of transcription factors to DNA methylation
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …
states throughout organism development. Epigenetics modifications, such as DNA …
Modeling the relationship of epigenetic modifications to transcription factor binding
Transcription factors (TFs) and epigenetic modifications play crucial roles in the regulation of
gene expression, and correlations between the two types of factors have been discovered …
gene expression, and correlations between the two types of factors have been discovered …
Cross-talk between site-specific transcription factors and DNA methylation states
A Blattler, PJ Farnham - Journal of Biological Chemistry, 2013 - ASBMB
DNA methylation, which occurs predominantly at CpG dinucleotides, is a potent epigenetic
repressor of transcription. Because DNA methylation is reversible, there is much interest in …
repressor of transcription. Because DNA methylation is reversible, there is much interest in …
[HTML][HTML] Toward a mechanistic understanding of DNA methylation readout by transcription factors
Epigenetic DNA modification impacts gene expression, but the underlying molecular
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …
Role of DNA methylation in modulating transcription factor occupancy
MT Maurano, H Wang, S John, A Shafer, T Canfield… - Cell reports, 2015 - cell.com
Although DNA methylation is commonly invoked as a mechanism for transcriptional
repression, the extent to which it actively silences transcription factor (TF) occupancy sites in …
repression, the extent to which it actively silences transcription factor (TF) occupancy sites in …
Quantitative analysis of the DNA methylation sensitivity of transcription factor complexes
Although DNA modifications play an important role in gene regulation, the underlying
mechanisms remain elusive. We developed EpiSELEX-seq to probe the sensitivity of …
mechanisms remain elusive. We developed EpiSELEX-seq to probe the sensitivity of …
Effects of cytosine methylation on transcription factor binding sites
Background DNA methylation in promoters is closely linked to downstream gene repression.
However, whether DNA methylation is a cause or a consequence of gene repression …
However, whether DNA methylation is a cause or a consequence of gene repression …
Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions
Distal regulatory elements, including enhancers, play a critical role in regulating gene
activity. Transcription factor binding to these elements correlates with Low Methylated …
activity. Transcription factor binding to these elements correlates with Low Methylated …
Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation
S Kaluscha, S Domcke, C Wirbelauer, MB Stadler… - Nature …, 2022 - nature.com
Cytosine methylation efficiently silences CpG-rich regulatory regions of genes and repeats
in mammalian genomes. To what extent this entails direct inhibition of transcription factor …
in mammalian genomes. To what extent this entails direct inhibition of transcription factor …
Measuring quantitative effects of methylation on transcription factor–DNA binding affinity
Z Zuo, B Roy, YK Chang, D Granas, GD Stormo - Science advances, 2017 - science.org
Methylation of CpG (cytosine-phosphate-guanine) dinucleotides is a common epigenetic
mark that influences gene expression. The effects of methylation on transcription factor (TF) …
mark that influences gene expression. The effects of methylation on transcription factor (TF) …
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