Sensitivity of transcription factors to DNA methylation

É Héberlé, AF Bardet - Essays in biochemistry, 2019 - portlandpress.com
Dynamic binding of transcription factors (TFs) to regulatory elements controls transcriptional
states throughout organism development. Epigenetics modifications, such as DNA …

Modeling the relationship of epigenetic modifications to transcription factor binding

L Liu, G Jin, X Zhou - Nucleic acids research, 2015 - academic.oup.com
Transcription factors (TFs) and epigenetic modifications play crucial roles in the regulation of
gene expression, and correlations between the two types of factors have been discovered …

Cross-talk between site-specific transcription factors and DNA methylation states

A Blattler, PJ Farnham - Journal of Biological Chemistry, 2013 - ASBMB
DNA methylation, which occurs predominantly at CpG dinucleotides, is a potent epigenetic
repressor of transcription. Because DNA methylation is reversible, there is much interest in …

[HTML][HTML] Toward a mechanistic understanding of DNA methylation readout by transcription factors

JF Kribelbauer, XJ Lu, R Rohs, RS Mann… - Journal of molecular …, 2020 - Elsevier
Epigenetic DNA modification impacts gene expression, but the underlying molecular
mechanisms are only partly understood. Adding a methyl group to a cytosine base locally …

Role of DNA methylation in modulating transcription factor occupancy

MT Maurano, H Wang, S John, A Shafer, T Canfield… - Cell reports, 2015 - cell.com
Although DNA methylation is commonly invoked as a mechanism for transcriptional
repression, the extent to which it actively silences transcription factor (TF) occupancy sites in …

Quantitative analysis of the DNA methylation sensitivity of transcription factor complexes

JF Kribelbauer, O Laptenko, S Chen, GD Martini… - Cell reports, 2017 - cell.com
Although DNA modifications play an important role in gene regulation, the underlying
mechanisms remain elusive. We developed EpiSELEX-seq to probe the sensitivity of …

Effects of cytosine methylation on transcription factor binding sites

YA Medvedeva, AM Khamis, IV Kulakovskiy… - BMC genomics, 2014 - Springer
Background DNA methylation in promoters is closely linked to downstream gene repression.
However, whether DNA methylation is a cause or a consequence of gene repression …

Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions

A Feldmann, R Ivanek, R Murr, D Gaidatzis… - PLoS …, 2013 - journals.plos.org
Distal regulatory elements, including enhancers, play a critical role in regulating gene
activity. Transcription factor binding to these elements correlates with Low Methylated …

Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation

S Kaluscha, S Domcke, C Wirbelauer, MB Stadler… - Nature …, 2022 - nature.com
Cytosine methylation efficiently silences CpG-rich regulatory regions of genes and repeats
in mammalian genomes. To what extent this entails direct inhibition of transcription factor …

Measuring quantitative effects of methylation on transcription factor–DNA binding affinity

Z Zuo, B Roy, YK Chang, D Granas, GD Stormo - Science advances, 2017 - science.org
Methylation of CpG (cytosine-phosphate-guanine) dinucleotides is a common epigenetic
mark that influences gene expression. The effects of methylation on transcription factor (TF) …