Phylogenomics is a new field that infers evolutionary relationships of taxa at the genome-
scale level. The increment of molecular data may raise the potential bias as the limiting …

Background In the past decade, transcriptome data have become an important component
of many phylogenetic studies. They are a cost-effective source of protein-coding gene …

Phylogenomics is the practice of attempting to infer evolutionary relationships at a genome-
level. This is becoming a standard step in the characterization of newly recovered genomes …

Current phylogenomic methods are still a long way from implementing a realistic genome
evolution model. An ideal approach would require a general joint analysis of genomic …

Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …

Motivation: Phylogenomics integrates the vast amount of phylogenetic information contained
in complete genome sequences, and is rapidly becoming the standard for reliably inferring …

Background The availability of sequences from whole genomes to reconstruct the tree of life
has the potential to enable the development of phylogenomic hypotheses in ways that have …

Phylogenomics data have grown exponentially over the last decades. It is currently common
for genome-wide projects to generate hundreds or even thousands of phylogenetic trees …

With the wealth of available genome sequences, a difficult and tedious part of inferring
phylogenomic trees is now to select genomes with an appropriate taxon density in the …

Motivation Diverse disciplines in biology process and analyze multiple sequence alignments
(MSAs) and phylogenetic trees to evaluate their information content, infer evolutionary …