Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)
Polyploidy is an important force in the evolution of flowering plants. Genomic merger and
doubling induce an extensive array of genomic effects, including immediate and long-term …
doubling induce an extensive array of genomic effects, including immediate and long-term …
Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution
Background Polyploidy has played a prominent role in shaping the genomic architecture of
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …
the angiosperms. Through allopolyploidization, several modern Gossypium (cotton) species …
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
Most eukaryotes have genomes that exhibit high levels of gene redundancy, much of which
seems to have arisen from one or more cycles of genome doubling. Polyploidy has been …
seems to have arisen from one or more cycles of genome doubling. Polyploidy has been …
Homoeolog expression bias and expression level dominance in allopolyploid cotton
Allopolyploidy is an evolutionary and mechanistically intriguing process, in that it entails the
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …
reconciliation of two or more sets of diverged genomes and regulatory interactions. In this …
Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton
Background Modern allotetraploid cotton contains an “A” and “D” genome from an ancestral
polyploidy event that occurred approximately 1–2 million years ago. Diploid A-and D …
polyploidy event that occurred approximately 1–2 million years ago. Diploid A-and D …
Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant
Polyploidy is an important driver of eukaryotic evolution, evident in many animals, fungi, and
plants. One consequence of polyploidy is subfunctionalization, in which the ancestral …
plants. One consequence of polyploidy is subfunctionalization, in which the ancestral …
Duplicated genes evolve independently after polyploid formation in cotton
Of the many processes that generate gene duplications, polyploidy is unique in that entire
genomes are duplicated. This process has been important in the evolution of many …
genomes are duplicated. This process has been important in the evolution of many …
Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton
A putative advantage of allopolyploidy is the possibility of differential selection of duplicated
(homeologous) genes originating from two different progenitor genomes. In this note we …
(homeologous) genes originating from two different progenitor genomes. In this note we …
Genomic expression dominance in allopolyploids
Background Allopolyploid speciation requires rapid evolutionary reconciliation of two
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …
Homoeologous nonreciprocal recombination in polyploid cotton
Polyploid formation and processes that create partial genomic duplication generate
redundant genomic information, whose fate is of particular interest to evolutionary biologists …
redundant genomic information, whose fate is of particular interest to evolutionary biologists …