Evolutionary biology has entered an era of unprecedented amounts of DNA sequence data,
as new sequencing technologies such as Massive Parallel Sequencing (MPS) can generate …

Next‐generation sequencing technologies (NGS) have revolutionized biological research by
significantly increasing data generation while simultaneously decreasing the time to data …

Xenomapper is a utility for post processing mapped DNA sequencing reads that have been
aligned to a primary genome and a secondary genome, and binning reads into species …

Background Sequencing of marker genes amplified from environmental samples, known as
amplicon sequencing, allows us to resolve some of the hidden diversity and elucidate …

The increasing availability of short‐read whole genome sequencing (WGS) provides
unprecedented opportunities to study ecological and evolutionary processes. Although loci …

Aligning short-read sequences is the foundational step to most genomic and transcriptomic
analyses, but not all tools perform equally, and choosing among the growing body of …

Sequencing whole genomes has become a standard research tool in many disciplines
including Molecular Ecology, but the rapid technological advances in combination with …

Motivation 16S rDNA hypervariable tag sequencing has become the de facto method for
accessing microbial diversity. Illumina paired-end sequencing, which produces two separate …

Target sequence capture has emerged as a powerful method to sequence hundreds or
thousands of genomic regions in a cost-and time-efficient approach. In most cases, however …

Despite many bioinformatic solutions for analyzing sequencing data, few options exist for
targeted sequence retrieval from whole genomic sequencing (WGS) data with the ultimate …