Shape signatures: a new approach to computer-aided ligand-and receptor-based drug design

RJ Zauhar, G Moyna, LF Tian, ZJ Li… - Journal of medicinal …, 2003 - ACS Publications
A unifying principle of rational drug design is the use of either shape similarity or
complementarity to identify compounds expected to be active against a given target. Shape …

3D QSAR in modern drug design

GE Kellogg, SF Semus - Modern Methods of Drug Discovery, 2003 - Springer
The belief that there is a direct relationship between chemical structure and biological
activity of therapeutic agents is fundamental to the field of medicinal chemistry. Indeed, the …

Application of the three-dimensional structures of protein target molecules in structure-based drug design

J Greer, JW Erickson, JJ Baldwin… - Journal of medicinal …, 1994 - ACS Publications
While the chemist of today faces many exciting and stimulating challenges, perhaps the
most demanding, promising, and rewarding one is the rational design of novel therapeutic …

Molecular connectivity III: Relationship to partition coefficients

WJ Murray, LH Hall, LB Kier - Journal of pharmaceutical …, 1975 - Wiley Online Library
The molecular connectivity index is shown to be linearly related to the octanol—water
partition coefficients of a variety of monofunctional chemical classes including esters …

Wiener index extension by counting even/odd graph distances

O Ivanciuc, T Ivanciuc, DJ Klein, WA Seitz… - Journal of Chemical …, 2001 - ACS Publications
Chemical structures of organic compounds are characterized numerically by a variety of
structural descriptors, one of the earliest and most widely used being the Wiener index W …

Rapid evaluation of shape similarity using Gaussian functions

AC Good, WG Richards - Journal of chemical information and …, 1993 - ACS Publications
An analytictechnique for the comparison of molecular shape is presented. The new
procedure fits Gaussian functions to the ST03G atomic orbital derived electron density …

Computational approaches to drug design

PW Finn, LE Kavraki - Algorithmica, 1999 - Springer
The rational approach to pharmaceutical drug design begins with an investigation of the
relationship between chemical structure and biological activity. Information gained from this …

[HTML][HTML] Rule of five violations among the FDA-approved small molecule protein kinase inhibitors

R Roskoski Jr - Pharmacological Research, 2023 - Elsevier
Because genetic alterations including mutations, overexpression, translocations, and
dysregulation of protein kinases are involved in the pathogenesis of many illnesses, this …

[引用][C] Harder than Diamond: Determining the Cross‐Sectional Area and Young's Modulus of Molecular Rods

L Itzhaki, E Altus, H Basch, S Hoz - Angewandte Chemie, 2005 - Wiley Online Library
used in the various definitions, in addition to the fact that the structure optimization was done
using the default parameters of the Gaussian program. Regarding the definitions used, the …

Molecular ID numbers: by design

M Randi - Journal of Chemical Information and Computer …, 1986 - ACS Publications
Recently, I proposed a novel structural index—called mo-lecular ID number—as a
potentially useful label for molecular skeletons. 1 The index was a result of developing …