Alternative polyadenylation diversifies post‐transcriptional regulation by selective RNA–protein interactions

I Gupta, S Clauder‐Münster, B Klaus… - Molecular systems …, 2014 - embopress.org
Recent research has uncovered extensive variability in the boundaries of transcript isoforms,
yet the functional consequences of this variation remain largely unexplored. Here, we …

Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality

E Ntini, AI Järvelin, J Bornholdt, Y Chen… - Nature structural & …, 2013 - nature.com
Active human promoters produce promoter-upstream transcripts (PROMPTs). Why these
RNAs are coupled to decay, whereas their neighboring promoter-downstream mRNAs are …

Gene regulation by sense–antisense overlap of polyadenylation signals

R Gu, Z Zhang, JN DeCerbo, GG Carmichael - Rna, 2009 - rnajournal.cshlp.org
We show here that expression of genes from convergent transcription units can be regulated
by the formation of double-stranded RNA (dsRNA) in the region of overlapping …

Alternative polyadenylation in the regulation and dysregulation of gene expression

RE Turner, AD Pattison, TH Beilharz - Seminars in cell & developmental …, 2018 - Elsevier
Transcriptional control shapes a cell's transcriptome composition, but it is RNA processing
that refines its expression. The untranslated regions (UTRs) of mRNA are hotspots for …

Transcriptional activity regulates alternative cleavage and polyadenylation

Z Ji, W Luo, W Li, M Hoque, Z Pan, Y Zhao… - Molecular systems …, 2011 - embopress.org
Genes containing multiple pre‐mRNA cleavage and polyadenylation sites, or polyA sites,
express mRNA isoforms with variable 3′ untranslated regions (UTRs). By systematic …

Novel upstream and downstream sequence elements contribute to polyadenylation efficiency

SK Darmon, CS Lutz - RNA biology, 2012 - Taylor & Francis
Polyadenylation is a 3′ mRNA processing event that contributes to gene expression by
affecting stability, export and translation of mRNA. Human polyadenylation signals (PAS) …

Specificity factors in cytoplasmic polyadenylation

A Charlesworth, HA Meijer… - Wiley Interdisciplinary …, 2013 - Wiley Online Library
Poly (A) tail elongation after export of an messenger RNA (mRNA) to the cytoplasm is called
cytoplasmic polyadenylation. It was first discovered in oocytes and embryos, where it has …

Landscape of RNA polyadenylation in E. coli

A Maes, C Gracia, N Innocenti, K Zhang… - Nucleic Acids …, 2017 - academic.oup.com
Polyadenylation is thought to be involved in the degradation and quality control of bacterial
RNAs but relatively few examples have been investigated. We used a combination of 5΄ …

Sequence determinants of polyadenylation-mediated regulation

IV Slutskin, A Weinberger, E Segal - Genome research, 2019 - genome.cshlp.org
The cleavage and polyadenylation reaction is a crucial step in transcription termination and
pre-mRNA maturation in human cells. Despite extensive research, the encoding of …

Pseudouridine and N6-methyladenosine modifications weaken PUF protein/RNA interactions

PP Vaidyanathan, I AlSadhan, DK Merriman… - RNA, 2017 - rnajournal.cshlp.org
RNA modifications are ubiquitous in biology, with over 100 distinct modifications. While the
vast majority were identified and characterized on abundant noncoding RNA such as tRNA …