Pseudouridine and N6-methyladenosine modifications weaken PUF protein/RNA interactions

PP Vaidyanathan, I AlSadhan, DK Merriman… - RNA, 2017 - rnajournal.cshlp.org
RNA modifications are ubiquitous in biology, with over 100 distinct modifications. While the
vast majority were identified and characterized on abundant noncoding RNA such as tRNA …

3′ untranslated regions are modular entities that determine polyadenylation profiles

KH Lui, JV Geisberg, Z Moqtaderi… - Molecular and Cellular …, 2022 - Am Soc Microbiol
The 3′ ends of eukaryotic mRNAs are generated by cleavage of nascent transcripts
followed by polyadenylation, which occurs at numerous sites within 3′ untranslated regions …

[HTML][HTML] Sequential Polyadenylation to Enable Alternative mRNA 3'End Formation

Y Hao, T Cai, C Liu, X Zhang, XD Fu - Molecules and cells, 2023 - Elsevier
In eukaryotic cells, a key RNA processing step to generate mature mRNA is the coupled
reaction for cleavage and polyadenylation (CPA) at the 3′ end of individual transcripts …

Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression

CS Lutz, A Moreira - Wiley Interdisciplinary Reviews: RNA, 2011 - Wiley Online Library
Alternative RNA processing mechanisms, including alternative splicing and alternative
polyadenylation, are increasingly recognized as important regulators of gene expression …

Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins

AG Cridge, LM Castelli, JB Smirnova… - Nucleic acids …, 2010 - academic.oup.com
Abstract eIF4E-binding proteins (4E-BPs) regulate translation of mRNAs in eukaryotes.
However the extent to which specific mRNA targets are regulated by 4E-BPs remains …

Alternative polyadenylation: a twist on mRNA 3′ end formation

CS Lutz - ACS chemical biology, 2008 - ACS Publications
Regulation of gene expression by RNA processing mechanisms is now understood to be an
important level of control in mammalian cells. Regulation at the level of RNA transcription …

Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors

AR Gruber, G Martin, W Keller… - Wiley Interdisciplinary …, 2014 - Wiley Online Library
Expression of mature messenger RNA s (mRNAs) requires appropriate transcription
initiation and termination, as well as pre‐mRNA processing by capping, splicing, cleavage …

The evolution of RNAs with multiple functions

ME Dinger, DK Gascoigne, JS Mattick - Biochimie, 2011 - Elsevier
Increasing numbers of transcripts have been reported to transmit both protein-coding and
regulatory information. Apart from challenging our conception of the gene, this observation …

Deciphering the rules by which 5′-UTR sequences affect protein expression in yeast

S Dvir, L Velten, E Sharon, D Zeevi… - Proceedings of the …, 2013 - National Acad Sciences
The 5′-untranslated region (5′-UTR) of mRNAs contains elements that affect expression,
yet the rules by which these regions exert their effect are poorly understood. Here, we …

[HTML][HTML] Context-specific regulation and function of mRNA alternative polyadenylation

S Mitschka, C Mayr - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Alternative cleavage and polyadenylation (APA) is a widespread mechanism to generate
mRNA isoforms with alternative 3′ untranslated regions (UTRs). The expression of …