RNA modifications and structures cooperate to guide RNA–protein interactions

CJT Lewis, T Pan, A Kalsotra - Nature reviews Molecular cell biology, 2017 - nature.com
An emerging body of evidence indicates that post-transcriptional gene regulation relies not
only on the sequence of mRNAs but also on their folding into intricate secondary structures …

Patterns of variant polyadenylation signal usage in human genes

E Beaudoing, S Freier, JR Wyatt, JM Claverie… - Genome …, 2000 - genome.cshlp.org
The formation of mature mRNAs in vertebrates involves the cleavage and polyadenylation of
the pre-mRNA, 10–30 nt downstream of an AAUAAA or AUUAAA signal sequence. The …

The contribution of alternative polyadenylation to the cancer phenotype

CP Masamha, EJ Wagner - Carcinogenesis, 2018 - academic.oup.com
Eukaryotic 3′-end formation is a critical step for mRNA maturation and involves a requisite
cleavage and polyadenylation event downstream of a polyadenylation signal. Recent …

Global analysis of regulatory divergence in the evolution of mouse alternative polyadenylation

MS Xiao, B Zhang, YS Li, Q Gao, W Sun… - Molecular systems …, 2016 - embopress.org
Alternative polyadenylation (APA), which is regulated by both cis‐elements and trans‐
factors, plays an important role in post‐transcriptional regulation of eukaryotic gene …

[HTML][HTML] Molecular insights into mRNA polyadenylation and deadenylation

J Liu, X Lu, S Zhang, L Yuan, Y Sun - International Journal of Molecular …, 2022 - mdpi.com
Poly (A) tails are present on almost all eukaryotic mRNAs, and play critical roles in mRNA
stability, nuclear export, and translation efficiency. The biosynthesis and shortening of a poly …

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression

S Lianoglou, V Garg, JL Yang, CS Leslie… - Genes & …, 2013 - genesdev.cshlp.org
More than half of human genes use alternative cleavage and polyadenylation (ApA) to
generate mRNA transcripts that differ in the lengths of their 3′ untranslated regions (UTRs) …

[HTML][HTML] Two yeast PUF proteins negatively regulate a single mRNA

BA Hook, AC Goldstrohm, DJ Seay… - Journal of Biological …, 2007 - ASBMB
mRNA stability and translation are regulated by protein repressors that bind 3′-
untranslated regions. PUF proteins provide a paradigm for these regulatory molecules: like …

Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes

JY Lee, Z Ji, B Tian - Nucleic acids research, 2008 - academic.oup.com
Abstract mRNA polyadenylation is an essential step for the maturation of almost all
eukaryotic mRNAs, and is tightly coupled with termination of transcription in defining the 3 …

Crosstalk between alternative polyadenylation and miRNAs in the regulation of protein translational efficiency

Y Fu, L Chen, C Chen, Y Ge, M Kang, Z Song… - Genome …, 2018 - genome.cshlp.org
3′ UTRs play important roles in the gene regulation network via their influence on mRNA
stability, translational efficiency, and subcellular localization. For a given gene, 3′ UTRs of …

[HTML][HTML] Ending the message: poly (A) signals then and now

NJ Proudfoot - Genes & development, 2011 - genesdev.cshlp.org
Abstract Polyadenylation [poly (A)] signals (PAS) are a defining feature of eukaryotic protein-
coding genes. The central sequence motif AAUAAA was identified in the mid-1970s and …