We have developed a semi-automatic methodology to reconstruct the phylogenetic species
tree in Protozoa, integrating different phylogenetic algorithms and programs, and …

The increasing number of available genomic data allowed the development of
phylogenomic analytical tools. Current methods compile information from single gene …

Background Genome-scale phylogenetic analysis based on core gene sets is routinely used
in microbiological research. However, the techniques are still not approachable for …

Species phylogenetic trees represent the evolutionary processes of organisms, and they are
fundamental in evolutionary research. Therefore, new methods have been developed to …

Modern phylogenetic studies may benefit from the analysis of complete genome sequences
of various microorganisms. Evolutionary inferences based on genome-scale analysis are …

Phylogenomics is a new field that infers evolutionary relationships of taxa at the genome-
scale level. The increment of molecular data may raise the potential bias as the limiting …

Molecular phylogenetics relies on accurate identification of orthologous sequences among
the taxa of interest. Most orthology inference programs available for use in phylogenomics …

Phylogenetic reconstruction aims at finding plausible hypotheses of the evolutionary history
of genes or species based on genomic sequence information. The distinction of orthologous …

Phylogeny reconstruction is a key instrument in numerous biological analyses, ranging from
evolutionary and ecology research, to conservation and systems biology. The increasing …

Phylogenomics is the practice of attempting to infer evolutionary relationships at a genome-
level. This is becoming a standard step in the characterization of newly recovered genomes …