For over a decade now, High Throughput sequencing (HTS) approaches have
revolutionized phylogenetics, both in terms of data production and methodology. While …

Resolving the relationships between Metazoa and other eukaryotic groups as well as
between metazoan phyla is central to the understanding of the origin and evolution of …

Background Understanding the evolutionary relationships of all eukaryotes on Earth
remains a paramount goal of modern biology, yet analyzing homologous sequences across …

In phylogenetic analysis, one possible approach to minimize missing data in DNA
supermatrices consists in sampling sequences from different species to obtain a complete …

Background In the past decade, transcriptome data have become an important component
of many phylogenetic studies. They are a cost-effective source of protein-coding gene …

Phylogenies built from multiple genes have become a common component of evolutionary
biology studies. Molecular phylogenomic matrices used to build multi-gene phylogenies can …

The increasing availability of complete genome data is facilitating the acquisition of
phylogenomic data sets, but the process of obtaining orthologous sequences from other …

The reconstruction of the chromosomal organization of ancient genomes has many
applications in comparative and evolutionary genomics. Here we propose a novel …

Abstract Possvm (Phylogenetic Ortholog Sorting with Species oVerlap and MCL [Markov
clustering algorithm]) is a tool that automates the process of identifying clusters of …