Phylogenetic trees are used to represent the evolutionary relationship among various
groups of species. In this paper, a novel method for inferring prokaryotic phylogenies using …

Purpose One of our central research goals is to identify evolution's greatest innovations. The
space we're searching (ie, the entire tree of life) is vast and remains mostly uncharted …

Figure 5.2 An example for illustrating the least-move algorithm. The first step finds the cluster
pair (K1 and G1) that shares the most number of proteins (shown in the circles). The second …

Overlapping genes (OGs) represent one type of widespread genomic feature in bacterial
genomes and have been used as rare genomic markers in phylogeny inference of closely …

Phylogenomics: Constrained gene tree inference | Nature Ecology & Evolution Skip to main
content Thank you for visiting nature.com. You are using a browser version with limited support …

Background Ongoing genome sequencing projects have led to a phylogenetic approach
based on genome-scale data (phylogenomics), which is beginning to shed light on …

Identification of orthologous or paralogous relationships of coding genes is fundamental to
all aspects of comparative genomics. For accurate identification of orthologs among deeply …

High-throughput assays from genomics, proteomics, metabolomics, and next generation
sequencing produce massive omics datasets that are challenging to analyze in biological or …

Fungi are possibly the most diverse eukaryotic kingdom, with over a million member species
and an evolutionary history dating back a billion years. Fungi have been at the forefront of …

The Composition Vector Tree (CVTree) is a parameter-free and alignment-free method to
infer pro-karyotic phylogeny from their complete genomes. It is distinct from the traditional …