Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing

T Kyndt, S Denil, A Haegeman… - Journal of …, 2012 - academic.oup.com
Despite the major physiological dissimilarities between mature root regions and their tips,
differences in their gene expression profiles remain largely unexplored. In this research, the …

Genome‐wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

H Takehisa, Y Sato, M Igarashi, T Abiko… - The Plant …, 2012 - Wiley Online Library
The root system is a crucial determinant of plant growth potential because of its important
functions, eg uptake of water and nutrients, structural support and interaction with symbiotic …

Transcriptome profiling of laser-captured crown root primordia reveals new pathways activated during early stages of crown root formation in rice

J Lavarenne, M Gonin, A Champion, M Javelle… - Plos one, 2020 - journals.plos.org
Crown roots constitute the main part of the rice root system. Several key genes involved in
crown root initiation and development have been identified by functional genomics …

Transcriptional landscape of rice roots at the single-cell resolution

Q Liu, Z Liang, D Feng, S Jiang, Y Wang, Z Du, R Li… - Molecular Plant, 2021 - cell.com
There are two main types of root systems in flowering plants, namely taproot systems of
dicots and fibrous root systems found in monocots. Despite this fundamental split, our …

Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root

TQ Zhang, Y Chen, Y Liu, WH Lin, JW Wang - Nature communications, 2021 - nature.com
Root development relies on the establishment of meristematic tissues that give rise to
distinct cell types that differentiate across defined temporal and spatial gradients. Dissection …

Auxin-responsive (phospho) proteome analysis reveals key biological processes and signaling associated with shoot-borne crown root development in rice

H Singh, Z Singh, T Zhu, X Xu… - Plant and Cell …, 2022 - academic.oup.com
The rice root system is primarily composed of shoot-borne adventitious/crown roots
(ARs/CRs) that develop from the coleoptile base, and therefore, it is an excellent model …

Cell Type-Specific Differentiation Between Indica and Japonica Rice Root Tip Responses to Different Environments Based on Single-Cell RNA Sequencing

Z Wang, D Cheng, C Fan, C Zhang, C Zhang… - Frontiers in …, 2021 - frontiersin.org
Background: As Oryza sativa ssp. indica and Oryza sativa ssp. japonica are the two major
subspecies of Asian cultivated rice, the adaptative evolution of these varieties in divergent …

Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.)

Q Lou, L Chen, H Mei, K Xu, H Wei, F Feng… - Frontiers in plant …, 2017 - frontiersin.org
Drought is the most serious abiotic stress limiting rice production, and deep root is the key
contributor to drought avoidance. However, the genetic mechanism regulating the …

Progress in rice root system research

Y Liang, J Zhou, W Nan, D Duan… - Chinese Bulletin of …, 2016 - chinbullbotany.com
Rice is one of the most important staple food crops in the world and occupies an important
position in maintaining sustainable food supply in China. Root is an indispensable organ of …

[HTML][HTML] Single-cell transcriptome atlas of the leaf and root of rice seedlings

Y Wang, Q Huan, K Li, W Qian - Journal of Genetics and Genomics, 2021 - Elsevier
As a multicellular organism, rice flourishes relying on gene expression diversity among cells
of various functions. However, cellular-resolution transcriptome features are yet to be fully …