Understanding Meiotic Recombination and Genomic Organisation of Plant Species

P Wlodzimierz - 2023 - repository.cam.ac.uk
Reciprocal exchange of eukaryotic genetic material during meiotic crossing over is a major
source of genetic variation in sexually reproducing species. Crossover events are not …

SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species

D Veltri, MM Wight, JA Crouch - Nucleic Acids Research, 2016 - academic.oup.com
Defining syntenic relationships among orthologous gene clusters is a frequent undertaking
of biologists studying organismal evolution through comparative genomic approaches. With …

Genome-wide estimation of evolutionary distance and phylogenetic analysis of homologous genes

M Zhao, B Zhang, J Ma, D Lisch - Bio-protocol, 2018 - bio-protocol.org
Homologous genes, including paralogs and orthologs, are genes that share sequence
homologies within or between different species. Homologous genes originate from a …

[图书][B] Molecular genetics of Brassica oleracea and Arabidopsis thaliana

TH Lan - 1999 - search.proquest.com
A detailed comparative map of Brassica oleracea and Arabidopsis thaliana has been
established based largely on mapping of Arabidopsis ESTs in two Arabidopsis and four …

[PDF][PDF] Breaks of macrosynteny and collinearity among moth bean

ARS Oliveira, L do Vale Martins, FO Bustamante… - 2020 - researchgate.net
Comparative cytogenetic mapping is a powerful approach to gain insights into genome
organization of orphan crops, lacking a whole sequenced genome. To investigate the …

Screening synteny blocks in pairwise genome comparisons through integer programming

H Tang, E Lyons, B Pedersen, JC Schnable… - BMC …, 2011 - Springer
Background It is difficult to accurately interpret chromosomal correspondences such as true
orthology and paralogy due to significant divergence of genomes from a common ancestor …

Machine learning reveals conserved chromatin patterns determining meiotic recombination sites in plants

M Wang, S Shilo, A Zhou, M Zelkowski, MA Olson… - bioRxiv, 2022 - biorxiv.org
Distribution of meiotic recombination events in plants has been associated with local
chromatin and DNA characteristics, chromosome landmark proximity, and other features …

[HTML][HTML] Chromosome genomics uncovers plant genome organization and function

J Zwyrtková, H Šimková, J Doležel - Biotechnology Advances, 2021 - Elsevier
The identification of causal genomic loci and their interactions underlying various traits in
plants has been greatly aided by progress in understanding the organization of the nuclear …

PhylDiag: identifying complex synteny blocks that include tandem duplications using phylogenetic gene trees

JMEX Lucas, M Muffato, H Roest Crollius - BMC bioinformatics, 2014 - Springer
Background Extant genomes share regions where genes have the same order and
orientation, which are thought to arise from the conservation of an ancestral order of genes …

Molecular mechanisms of homologous chromosome pairing and segregation in plants

J Zhang, B Zhang, H Su, JA Birchler, F Han - Journal of Genetics and …, 2014 - Elsevier
In most eukaryotic species, three basic steps of pairing, recombination and synapsis occur
during prophase of meiosis I. Homologous chromosomal pairing and recombination are …